Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32370

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32340 and PGA1_c32350 are separated by 420 nucleotidesPGA1_c32350 and PGA1_c32360 are separated by 25 nucleotidesPGA1_c32360 and PGA1_c32370 are separated by 184 nucleotidesPGA1_c32370 and PGA1_c32390 are separated by 853 nucleotides PGA1_c32340: PGA1_c32340 - 23S ribosomal RNA, at 3,389,620 to 3,392,445 _c32340 PGA1_c32350: PGA1_c32350 - tRNA-Ile, at 3,392,866 to 3,392,942 _c32350 PGA1_c32360: PGA1_c32360 - tRNA-Ala, at 3,392,968 to 3,393,043 _c32360 PGA1_c32370: PGA1_c32370 - 16S ribosomal RNA, at 3,393,228 to 3,394,679 _c32370 PGA1_c32390: PGA1_c32390 - Predicted membrane protein, at 3,395,533 to 3,396,129 _c32390 Position (kb) 3393 3394 3395Strain fitness (log2 ratio) -2 -1 0 1 2at 3395.348 kb on - strandat 3395.353 kb on - strandat 3395.361 kb on + strandat 3395.384 kb on + strandat 3395.384 kb on + strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.392 kb on - strandat 3395.421 kb on - strandat 3395.531 kb on + strandat 3395.642 kb on - strand, within PGA1_c32390at 3395.644 kb on + strand, within PGA1_c32390at 3395.644 kb on + strand, within PGA1_c32390at 3395.644 kb on + strand, within PGA1_c32390at 3395.647 kb on - strand, within PGA1_c32390

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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3,395,348 - +0.2
3,395,353 - +0.1
3,395,361 + -0.0
3,395,384 + +1.1
3,395,384 + -1.4
3,395,392 - -1.0
3,395,392 - -1.5
3,395,392 - +1.9
3,395,392 - +1.5
3,395,392 - +0.3
3,395,392 - +1.5
3,395,392 - -1.6
3,395,392 - +0.3
3,395,392 - +1.0
3,395,392 - -2.2
3,395,392 - +0.4
3,395,392 - +0.7
3,395,421 - -0.8
3,395,531 + +0.7
3,395,642 - PGA1_c32390 0.18 +0.4
3,395,644 + PGA1_c32390 0.19 -0.8
3,395,644 + PGA1_c32390 0.19 -0.5
3,395,644 + PGA1_c32390 0.19 -2.4
3,395,647 - PGA1_c32390 0.19 -0.5

Or see this region's nucleotide sequence