Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32340 and PGA1_c32350 are separated by 420 nucleotides PGA1_c32350 and PGA1_c32360 are separated by 25 nucleotides PGA1_c32360 and PGA1_c32370 are separated by 184 nucleotides PGA1_c32370 and PGA1_c32390 are separated by 853 nucleotides
PGA1_c32340: PGA1_c32340 - 23S ribosomal RNA, at 3,389,620 to 3,392,445
_c32340
PGA1_c32350: PGA1_c32350 - tRNA-Ile, at 3,392,866 to 3,392,942
_c32350
PGA1_c32360: PGA1_c32360 - tRNA-Ala, at 3,392,968 to 3,393,043
_c32360
PGA1_c32370: PGA1_c32370 - 16S ribosomal RNA, at 3,393,228 to 3,394,679
_c32370
PGA1_c32390: PGA1_c32390 - Predicted membrane protein, at 3,395,533 to 3,396,129
_c32390
Position (kb)
3393
3394
3395 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3395.348 kb on - strand at 3395.353 kb on - strand at 3395.361 kb on + strand at 3395.384 kb on + strand at 3395.384 kb on + strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.392 kb on - strand at 3395.421 kb on - strand at 3395.531 kb on + strand at 3395.642 kb on - strand, within PGA1_c32390 at 3395.644 kb on + strand, within PGA1_c32390 at 3395.644 kb on + strand, within PGA1_c32390 at 3395.644 kb on + strand, within PGA1_c32390 at 3395.647 kb on - strand, within PGA1_c32390
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 3,395,348 - +0.2 3,395,353 - +0.1 3,395,361 + -0.0 3,395,384 + +1.1 3,395,384 + -1.4 3,395,392 - -1.0 3,395,392 - -1.5 3,395,392 - +1.9 3,395,392 - +1.5 3,395,392 - +0.3 3,395,392 - +1.5 3,395,392 - -1.6 3,395,392 - +0.3 3,395,392 - +1.0 3,395,392 - -2.2 3,395,392 - +0.4 3,395,392 - +0.7 3,395,421 - -0.8 3,395,531 + +0.7 3,395,642 - PGA1_c32390 0.18 +0.4 3,395,644 + PGA1_c32390 0.19 -0.8 3,395,644 + PGA1_c32390 0.19 -0.5 3,395,644 + PGA1_c32390 0.19 -2.4 3,395,647 - PGA1_c32390 0.19 -0.5
Or see this region's nucleotide sequence