Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31680

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31670 and PGA1_c31680 are separated by 127 nucleotidesPGA1_c31680 and PGA1_c31690 are separated by 95 nucleotides PGA1_c31670: PGA1_c31670 - AFG1-like ATPase, at 3,307,586 to 3,308,656 _c31670 PGA1_c31680: PGA1_c31680 - putative bifunctional enzyme FolC, at 3,308,784 to 3,310,052 _c31680 PGA1_c31690: PGA1_c31690 - acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 3,310,148 to 3,311,092 _c31690 Position (kb) 3308 3309 3310 3311Strain fitness (log2 ratio) -3 -2 -1 0 1at 3307.905 kb on + strand, within PGA1_c31670at 3307.913 kb on - strand, within PGA1_c31670at 3308.086 kb on + strand, within PGA1_c31670at 3308.217 kb on - strand, within PGA1_c31670at 3308.448 kb on + strand, within PGA1_c31670at 3308.512 kb on + strand, within PGA1_c31670at 3308.525 kb on - strand, within PGA1_c31670at 3308.570 kb on + strandat 3308.615 kb on - strandat 3308.635 kb on + strandat 3308.635 kb on + strandat 3308.643 kb on - strandat 3308.643 kb on - strandat 3308.645 kb on + strandat 3308.650 kb on + strandat 3308.653 kb on - strandat 3308.659 kb on - strandat 3308.719 kb on + strandat 3308.775 kb on + strandat 3308.801 kb on + strandat 3308.809 kb on - strandat 3310.066 kb on + strandat 3310.069 kb on - strandat 3310.086 kb on + strandat 3310.250 kb on + strand, within PGA1_c31690

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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3,307,905 + PGA1_c31670 0.30 +1.1
3,307,913 - PGA1_c31670 0.31 +0.7
3,308,086 + PGA1_c31670 0.47 -2.0
3,308,217 - PGA1_c31670 0.59 -0.5
3,308,448 + PGA1_c31670 0.80 -0.0
3,308,512 + PGA1_c31670 0.86 +0.1
3,308,525 - PGA1_c31670 0.88 +0.2
3,308,570 + +0.8
3,308,615 - -0.0
3,308,635 + +0.5
3,308,635 + -0.1
3,308,643 - +0.5
3,308,643 - +0.5
3,308,645 + +0.8
3,308,650 + -1.9
3,308,653 - -0.7
3,308,659 - -0.4
3,308,719 + -1.3
3,308,775 + +0.8
3,308,801 + -2.3
3,308,809 - -3.4
3,310,066 + -0.3
3,310,069 - -1.5
3,310,086 + -0.3
3,310,250 + PGA1_c31690 0.11 +0.5

Or see this region's nucleotide sequence