Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29880

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29860 and PGA1_c29870 are separated by 256 nucleotidesPGA1_c29870 and PGA1_c29880 overlap by 4 nucleotidesPGA1_c29880 and PGA1_c29890 are separated by 3 nucleotides PGA1_c29860: PGA1_c29860 - hypothetical protein, at 3,122,523 to 3,123,185 _c29860 PGA1_c29870: PGA1_c29870 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 3,123,442 to 3,124,134 _c29870 PGA1_c29880: PGA1_c29880 - putative tRNA synthetase, at 3,124,131 to 3,125,219 _c29880 PGA1_c29890: PGA1_c29890 - histidyl-tRNA synthetase HisS, at 3,125,223 to 3,126,710 _c29890 Position (kb) 3124 3125 3126Strain fitness (log2 ratio) -2 -1 0 1at 3123.135 kb on - strandat 3123.150 kb on - strandat 3123.169 kb on + strandat 3123.221 kb on - strandat 3123.242 kb on + strandat 3123.242 kb on + strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.252 kb on + strandat 3123.252 kb on + strandat 3123.252 kb on + strandat 3123.260 kb on - strandat 3123.260 kb on - strandat 3123.265 kb on - strandat 3123.331 kb on - strandat 3123.333 kb on - strandat 3123.377 kb on + strandat 3123.385 kb on - strandat 3123.400 kb on - strandat 3123.411 kb on - strandat 3123.440 kb on + strandat 3123.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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3,123,135 - -1.2
3,123,150 - +0.8
3,123,169 + +1.3
3,123,221 - +0.5
3,123,242 + +0.7
3,123,242 + -1.1
3,123,250 - -0.3
3,123,250 - -0.2
3,123,250 - -1.3
3,123,250 - +0.4
3,123,250 - -1.4
3,123,252 + +0.1
3,123,252 + +1.0
3,123,252 + +0.9
3,123,260 - -1.8
3,123,260 - -0.8
3,123,265 - +0.7
3,123,331 - -1.1
3,123,333 - +0.1
3,123,377 + -0.1
3,123,385 - -1.9
3,123,400 - -0.4
3,123,411 - -0.6
3,123,440 + -2.2
3,123,467 - +0.9

Or see this region's nucleotide sequence