Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02960 and PGA1_c02970 overlap by 4 nucleotides PGA1_c02970 and PGA1_c02980 are separated by 64 nucleotides PGA1_c02980 and PGA1_c02990 are separated by 217 nucleotides PGA1_c02990 and PGA1_c03000 are separated by 97 nucleotides
PGA1_c02960: PGA1_c02960 - Predicted acetyltransferase, at 285,218 to 286,126
_c02960
PGA1_c02970: PGA1_c02970 - hypothetical protein, at 286,123 to 286,650
_c02970
PGA1_c02980: PGA1_c02980 - glutamate-cysteine ligase, at 286,715 to 288,085
_c02980
PGA1_c02990: PGA1_c02990 - hypothetical protein, at 288,303 to 288,557
_c02990
PGA1_c03000: PGA1_c03000 - YHS domain., at 288,655 to 289,128
_c03000
Position (kb) 286
287
288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.810 kb on - strand, within PGA1_c02960 at 285.895 kb on + strand, within PGA1_c02960 at 285.903 kb on - strand, within PGA1_c02960 at 285.947 kb on + strand, within PGA1_c02960 at 285.950 kb on - strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.963 kb on - strand, within PGA1_c02960 at 285.978 kb on + strand, within PGA1_c02960 at 285.986 kb on - strand, within PGA1_c02960 at 285.992 kb on + strand, within PGA1_c02960 at 286.013 kb on + strand, within PGA1_c02960 at 286.104 kb on + strand at 286.108 kb on + strand at 286.108 kb on + strand at 286.110 kb on - strand at 286.111 kb on - strand at 286.153 kb on + strand at 286.161 kb on - strand at 286.161 kb on - strand at 286.186 kb on + strand, within PGA1_c02970 at 286.243 kb on + strand, within PGA1_c02970 at 286.243 kb on + strand, within PGA1_c02970 at 286.243 kb on + strand, within PGA1_c02970 at 286.401 kb on - strand, within PGA1_c02970 at 286.416 kb on + strand, within PGA1_c02970 at 286.425 kb on + strand, within PGA1_c02970 at 286.433 kb on - strand, within PGA1_c02970 at 286.463 kb on + strand, within PGA1_c02970 at 286.476 kb on - strand, within PGA1_c02970 at 286.485 kb on - strand, within PGA1_c02970 at 286.505 kb on + strand, within PGA1_c02970 at 286.526 kb on - strand, within PGA1_c02970 at 286.526 kb on - strand, within PGA1_c02970 at 286.536 kb on + strand, within PGA1_c02970 at 286.616 kb on + strand at 286.632 kb on - strand at 286.645 kb on + strand at 286.652 kb on - strand at 286.696 kb on + strand at 286.704 kb on - strand at 287.344 kb on - strand, within PGA1_c02980 at 288.081 kb on + strand at 288.081 kb on + strand at 288.089 kb on - strand at 288.095 kb on - strand at 288.102 kb on + strand at 288.110 kb on + strand at 288.110 kb on - strand at 288.118 kb on - strand at 288.135 kb on - strand at 288.185 kb on + strand at 288.193 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.201 kb on + strand at 288.241 kb on - strand at 288.249 kb on + strand at 288.278 kb on + strand at 288.278 kb on + strand at 288.278 kb on + strand at 288.278 kb on + strand at 288.286 kb on - strand at 288.286 kb on - strand at 288.294 kb on + strand at 288.294 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.300 kb on + strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.357 kb on - strand, within PGA1_c02990 at 288.357 kb on - strand, within PGA1_c02990 at 288.373 kb on - strand, within PGA1_c02990 at 288.380 kb on - strand, within PGA1_c02990 at 288.380 kb on - strand, within PGA1_c02990 at 288.454 kb on + strand, within PGA1_c02990 at 288.454 kb on + strand, within PGA1_c02990 at 288.460 kb on + strand, within PGA1_c02990 at 288.465 kb on + strand, within PGA1_c02990 at 288.480 kb on - strand, within PGA1_c02990 at 288.487 kb on + strand, within PGA1_c02990 at 288.495 kb on - strand, within PGA1_c02990 at 288.526 kb on - strand, within PGA1_c02990 at 288.554 kb on + strand at 288.554 kb on + strand at 288.589 kb on - strand at 288.596 kb on - strand at 288.596 kb on - strand at 288.646 kb on + strand at 288.653 kb on + strand at 288.677 kb on - strand at 288.693 kb on + strand at 288.747 kb on - strand, within PGA1_c03000 at 288.758 kb on - strand, within PGA1_c03000 at 288.768 kb on + strand, within PGA1_c03000 at 288.768 kb on + strand, within PGA1_c03000 at 288.768 kb on + strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.831 kb on - strand, within PGA1_c03000 at 288.898 kb on - strand, within PGA1_c03000 at 288.961 kb on + strand, within PGA1_c03000 at 288.976 kb on - strand, within PGA1_c03000 at 289.005 kb on + strand, within PGA1_c03000 at 289.005 kb on + strand, within PGA1_c03000 at 289.013 kb on - strand, within PGA1_c03000 at 289.014 kb on - strand, within PGA1_c03000 at 289.036 kb on - strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.070 kb on + strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 285,810 - PGA1_c02960 0.65 +0.7 285,895 + PGA1_c02960 0.74 -0.0 285,903 - PGA1_c02960 0.75 +1.5 285,947 + PGA1_c02960 0.80 +0.2 285,950 - PGA1_c02960 0.81 -2.3 285,955 + PGA1_c02960 0.81 -0.8 285,955 + PGA1_c02960 0.81 -0.9 285,955 + PGA1_c02960 0.81 +0.8 285,963 - PGA1_c02960 0.82 -1.3 285,978 + PGA1_c02960 0.84 +0.5 285,986 - PGA1_c02960 0.84 +0.0 285,992 + PGA1_c02960 0.85 +0.8 286,013 + PGA1_c02960 0.87 -0.4 286,104 + -1.6 286,108 + -1.6 286,108 + -2.2 286,110 - -0.8 286,111 - -1.8 286,153 + +1.5 286,161 - +1.5 286,161 - +1.3 286,186 + PGA1_c02970 0.12 -1.6 286,243 + PGA1_c02970 0.23 +0.5 286,243 + PGA1_c02970 0.23 -0.8 286,243 + PGA1_c02970 0.23 +0.0 286,401 - PGA1_c02970 0.53 +1.0 286,416 + PGA1_c02970 0.55 -0.8 286,425 + PGA1_c02970 0.57 -1.9 286,433 - PGA1_c02970 0.59 -1.6 286,463 + PGA1_c02970 0.64 -1.3 286,476 - PGA1_c02970 0.67 +0.4 286,485 - PGA1_c02970 0.69 +0.5 286,505 + PGA1_c02970 0.72 -1.0 286,526 - PGA1_c02970 0.76 +1.7 286,526 - PGA1_c02970 0.76 -1.3 286,536 + PGA1_c02970 0.78 +0.1 286,616 + -1.0 286,632 - +0.1 286,645 + -0.0 286,652 - +0.7 286,696 + -0.3 286,704 - -0.3 287,344 - PGA1_c02980 0.46 -1.0 288,081 + -1.0 288,081 + +2.1 288,089 - -0.8 288,095 - +0.3 288,102 + +0.8 288,110 + -0.8 288,110 - -0.3 288,118 - -0.2 288,135 - +0.9 288,185 + -1.6 288,193 - -0.4 288,198 - -0.0 288,198 - +0.4 288,201 + -0.1 288,241 - -0.2 288,249 + +0.5 288,278 + -1.5 288,278 + +0.2 288,278 + +1.1 288,278 + -0.8 288,286 - -1.0 288,286 - -0.1 288,294 + +0.2 288,294 + +2.0 288,295 + +0.0 288,295 + -0.6 288,295 + +1.9 288,295 + +0.3 288,295 + +1.3 288,295 + +1.1 288,295 + -0.6 288,295 + +0.5 288,295 + -1.6 288,300 + -1.4 288,303 - -0.3 288,303 - +1.0 288,303 - -0.9 288,303 - -0.5 288,303 - -1.0 288,357 - PGA1_c02990 0.21 +0.9 288,357 - PGA1_c02990 0.21 +1.7 288,373 - PGA1_c02990 0.27 -0.7 288,380 - PGA1_c02990 0.30 -0.6 288,380 - PGA1_c02990 0.30 -1.0 288,454 + PGA1_c02990 0.59 -0.0 288,454 + PGA1_c02990 0.59 -2.3 288,460 + PGA1_c02990 0.62 -0.3 288,465 + PGA1_c02990 0.64 -0.2 288,480 - PGA1_c02990 0.69 +0.4 288,487 + PGA1_c02990 0.72 +0.7 288,495 - PGA1_c02990 0.75 -0.0 288,526 - PGA1_c02990 0.87 -0.1 288,554 + -1.0 288,554 + -1.0 288,589 - +0.9 288,596 - +0.3 288,596 - -1.0 288,646 + -0.3 288,653 + +1.2 288,677 - -0.6 288,693 + -0.5 288,747 - PGA1_c03000 0.19 +0.5 288,758 - PGA1_c03000 0.22 +2.0 288,768 + PGA1_c03000 0.24 +0.1 288,768 + PGA1_c03000 0.24 -0.3 288,768 + PGA1_c03000 0.24 +0.2 288,776 - PGA1_c03000 0.26 +0.1 288,776 - PGA1_c03000 0.26 +0.5 288,776 - PGA1_c03000 0.26 -2.0 288,776 - PGA1_c03000 0.26 +0.4 288,776 - PGA1_c03000 0.26 -0.2 288,776 - PGA1_c03000 0.26 +1.3 288,831 - PGA1_c03000 0.37 -0.2 288,898 - PGA1_c03000 0.51 -0.6 288,961 + PGA1_c03000 0.65 +0.4 288,976 - PGA1_c03000 0.68 -1.3 289,005 + PGA1_c03000 0.74 -0.3 289,005 + PGA1_c03000 0.74 +1.2 289,013 - PGA1_c03000 0.76 -0.6 289,014 - PGA1_c03000 0.76 -0.5 289,036 - PGA1_c03000 0.80 -1.3 289,065 + PGA1_c03000 0.86 -1.7 289,065 + PGA1_c03000 0.86 -1.3 289,070 + PGA1_c03000 0.88 +0.2 289,073 - PGA1_c03000 0.88 -0.3 289,073 - PGA1_c03000 0.88 +1.5 289,073 - PGA1_c03000 0.88 -0.4
Or see this region's nucleotide sequence