Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27990

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27980 and PGA1_c27990 are separated by 49 nucleotidesPGA1_c27990 and PGA1_c28000 are separated by 66 nucleotides PGA1_c27980: PGA1_c27980 - glucose-6-phosphate isomerase Pgi, at 2,916,497 to 2,918,137 _c27980 PGA1_c27990: PGA1_c27990 - glucose-6-phosphate 1-dehydrogenase, at 2,918,187 to 2,919,647 _c27990 PGA1_c28000: PGA1_c28000 - phosphogluconate dehydratase Edd, at 2,919,714 to 2,921,537 _c28000 Position (kb) 2918 2919 2920Strain fitness (log2 ratio) -1 0 1at 2918.131 kb on + strandat 2918.180 kb on - strandat 2918.374 kb on - strand, within PGA1_c27990at 2918.785 kb on - strand, within PGA1_c27990

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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2,918,131 + -1.7
2,918,180 - +0.6
2,918,374 - PGA1_c27990 0.13 +0.9
2,918,785 - PGA1_c27990 0.41 -1.4

Or see this region's nucleotide sequence