Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c25110 and PGA1_c25120 are separated by 0 nucleotides PGA1_c25120 and PGA1_c25130 are separated by 553 nucleotides
PGA1_c25110: PGA1_c25110 - ATP synthase subunit alpha, at 2,613,685 to 2,615,223
_c25110
PGA1_c25120: PGA1_c25120 - ATP synthase delta chain, at 2,615,224 to 2,615,784
_c25120
PGA1_c25130: PGA1_c25130 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 2,616,338 to 2,617,084
_c25130
Position (kb)
2615
2616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2615.908 kb on + strand at 2615.908 kb on + strand at 2615.908 kb on + strand at 2615.908 kb on + strand at 2615.908 kb on + strand at 2615.908 kb on + strand at 2615.908 kb on + strand at 2615.916 kb on - strand at 2615.916 kb on - strand at 2615.916 kb on - strand at 2615.916 kb on - strand at 2615.916 kb on - strand at 2615.916 kb on - strand at 2615.918 kb on + strand at 2615.918 kb on + strand at 2615.918 kb on + strand at 2615.926 kb on - strand at 2615.926 kb on - strand at 2615.926 kb on - strand at 2616.084 kb on - strand at 2616.152 kb on + strand at 2616.199 kb on - strand at 2616.200 kb on - strand at 2616.221 kb on + strand at 2616.235 kb on + strand at 2616.235 kb on + strand at 2616.235 kb on + strand at 2616.235 kb on + strand at 2616.240 kb on + strand at 2616.240 kb on + strand at 2616.243 kb on - strand at 2616.243 kb on - strand at 2616.248 kb on - strand at 2616.248 kb on - strand at 2616.264 kb on - strand at 2616.271 kb on - strand at 2616.271 kb on - strand at 2616.331 kb on + strand at 2616.343 kb on - strand at 2616.349 kb on - strand at 2616.365 kb on - strand at 2616.410 kb on + strand at 2616.434 kb on - strand, within PGA1_c25130 at 2616.524 kb on - strand, within PGA1_c25130 at 2616.627 kb on - strand, within PGA1_c25130 at 2616.629 kb on - strand, within PGA1_c25130 at 2616.629 kb on - strand, within PGA1_c25130 at 2616.639 kb on - strand, within PGA1_c25130 at 2616.754 kb on + strand, within PGA1_c25130 at 2616.754 kb on + strand, within PGA1_c25130
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,615,908 + -0.3 2,615,908 + -0.9 2,615,908 + -1.8 2,615,908 + -1.5 2,615,908 + -1.8 2,615,908 + -0.9 2,615,908 + -0.3 2,615,916 - -0.3 2,615,916 - -0.1 2,615,916 - -0.2 2,615,916 - +1.8 2,615,916 - -0.8 2,615,916 - -0.5 2,615,918 + -0.5 2,615,918 + +0.4 2,615,918 + -0.1 2,615,926 - -0.9 2,615,926 - -1.8 2,615,926 - +0.2 2,616,084 - -1.2 2,616,152 + -0.0 2,616,199 - +2.0 2,616,200 - +1.1 2,616,221 + -0.2 2,616,235 + +0.6 2,616,235 + -3.1 2,616,235 + +0.2 2,616,235 + -1.6 2,616,240 + -1.4 2,616,240 + -0.4 2,616,243 - +1.0 2,616,243 - -1.5 2,616,248 - +0.4 2,616,248 - -0.9 2,616,264 - +0.4 2,616,271 - -1.0 2,616,271 - +0.4 2,616,331 + +1.1 2,616,343 - +0.1 2,616,349 - -0.3 2,616,365 - +1.4 2,616,410 + +0.4 2,616,434 - PGA1_c25130 0.13 -0.2 2,616,524 - PGA1_c25130 0.25 -1.2 2,616,627 - PGA1_c25130 0.39 -0.3 2,616,629 - PGA1_c25130 0.39 +0.1 2,616,629 - PGA1_c25130 0.39 -0.8 2,616,639 - PGA1_c25130 0.40 +0.3 2,616,754 + PGA1_c25130 0.56 +1.4 2,616,754 + PGA1_c25130 0.56 -0.7
Or see this region's nucleotide sequence