Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25120

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c25110 and PGA1_c25120 are separated by 0 nucleotidesPGA1_c25120 and PGA1_c25130 are separated by 553 nucleotides PGA1_c25110: PGA1_c25110 - ATP synthase subunit alpha, at 2,613,685 to 2,615,223 _c25110 PGA1_c25120: PGA1_c25120 - ATP synthase delta chain, at 2,615,224 to 2,615,784 _c25120 PGA1_c25130: PGA1_c25130 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 2,616,338 to 2,617,084 _c25130 Position (kb) 2615 2616Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2615.908 kb on + strandat 2615.908 kb on + strandat 2615.908 kb on + strandat 2615.908 kb on + strandat 2615.908 kb on + strandat 2615.908 kb on + strandat 2615.908 kb on + strandat 2615.916 kb on - strandat 2615.916 kb on - strandat 2615.916 kb on - strandat 2615.916 kb on - strandat 2615.916 kb on - strandat 2615.916 kb on - strandat 2615.918 kb on + strandat 2615.918 kb on + strandat 2615.918 kb on + strandat 2615.926 kb on - strandat 2615.926 kb on - strandat 2615.926 kb on - strandat 2616.084 kb on - strandat 2616.152 kb on + strandat 2616.199 kb on - strandat 2616.200 kb on - strandat 2616.221 kb on + strandat 2616.235 kb on + strandat 2616.235 kb on + strandat 2616.235 kb on + strandat 2616.235 kb on + strandat 2616.240 kb on + strandat 2616.240 kb on + strandat 2616.243 kb on - strandat 2616.243 kb on - strandat 2616.248 kb on - strandat 2616.248 kb on - strandat 2616.264 kb on - strandat 2616.271 kb on - strandat 2616.271 kb on - strandat 2616.331 kb on + strandat 2616.343 kb on - strandat 2616.349 kb on - strandat 2616.365 kb on - strandat 2616.410 kb on + strandat 2616.434 kb on - strand, within PGA1_c25130at 2616.524 kb on - strand, within PGA1_c25130at 2616.627 kb on - strand, within PGA1_c25130at 2616.629 kb on - strand, within PGA1_c25130at 2616.629 kb on - strand, within PGA1_c25130at 2616.639 kb on - strand, within PGA1_c25130at 2616.754 kb on + strand, within PGA1_c25130at 2616.754 kb on + strand, within PGA1_c25130

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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2,615,908 + -0.3
2,615,908 + -0.9
2,615,908 + -1.8
2,615,908 + -1.5
2,615,908 + -1.8
2,615,908 + -0.9
2,615,908 + -0.3
2,615,916 - -0.3
2,615,916 - -0.1
2,615,916 - -0.2
2,615,916 - +1.8
2,615,916 - -0.8
2,615,916 - -0.5
2,615,918 + -0.5
2,615,918 + +0.4
2,615,918 + -0.1
2,615,926 - -0.9
2,615,926 - -1.8
2,615,926 - +0.2
2,616,084 - -1.2
2,616,152 + -0.0
2,616,199 - +2.0
2,616,200 - +1.1
2,616,221 + -0.2
2,616,235 + +0.6
2,616,235 + -3.1
2,616,235 + +0.2
2,616,235 + -1.6
2,616,240 + -1.4
2,616,240 + -0.4
2,616,243 - +1.0
2,616,243 - -1.5
2,616,248 - +0.4
2,616,248 - -0.9
2,616,264 - +0.4
2,616,271 - -1.0
2,616,271 - +0.4
2,616,331 + +1.1
2,616,343 - +0.1
2,616,349 - -0.3
2,616,365 - +1.4
2,616,410 + +0.4
2,616,434 - PGA1_c25130 0.13 -0.2
2,616,524 - PGA1_c25130 0.25 -1.2
2,616,627 - PGA1_c25130 0.39 -0.3
2,616,629 - PGA1_c25130 0.39 +0.1
2,616,629 - PGA1_c25130 0.39 -0.8
2,616,639 - PGA1_c25130 0.40 +0.3
2,616,754 + PGA1_c25130 0.56 +1.4
2,616,754 + PGA1_c25130 0.56 -0.7

Or see this region's nucleotide sequence