Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23910

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23900 and PGA1_c23910 are separated by 192 nucleotidesPGA1_c23910 and PGA1_c23920 are separated by 130 nucleotides PGA1_c23900: PGA1_c23900 - CTP synthase PyrG, at 2,493,485 to 2,495,128 _c23900 PGA1_c23910: PGA1_c23910 - fructose-bisphosphate aldolase class 1, at 2,495,321 to 2,496,223 _c23910 PGA1_c23920: PGA1_c23920 - enoyl-CoA hydratase/isomerase-like protein, at 2,496,354 to 2,497,139 _c23920 Position (kb) 2495 2496 2497Strain fitness (log2 ratio) -1 0 1 2at 2495.314 kb on - strandat 2495.638 kb on + strand, within PGA1_c23910at 2496.240 kb on - strandat 2496.240 kb on - strandat 2496.241 kb on + strandat 2496.307 kb on + strandat 2496.477 kb on + strand, within PGA1_c23920at 2496.525 kb on + strand, within PGA1_c23920at 2496.533 kb on - strand, within PGA1_c23920at 2496.602 kb on + strand, within PGA1_c23920at 2496.637 kb on + strand, within PGA1_c23920at 2496.659 kb on + strand, within PGA1_c23920at 2496.672 kb on - strand, within PGA1_c23920at 2496.793 kb on - strand, within PGA1_c23920at 2496.847 kb on + strand, within PGA1_c23920at 2496.905 kb on - strand, within PGA1_c23920at 2496.930 kb on + strand, within PGA1_c23920at 2496.975 kb on + strand, within PGA1_c23920at 2496.995 kb on - strand, within PGA1_c23920at 2497.159 kb on + strandat 2497.213 kb on - strandat 2497.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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2,495,314 - -1.2
2,495,638 + PGA1_c23910 0.35 -1.5
2,496,240 - -0.7
2,496,240 - +0.8
2,496,241 + -0.6
2,496,307 + +0.4
2,496,477 + PGA1_c23920 0.16 +0.3
2,496,525 + PGA1_c23920 0.22 -1.6
2,496,533 - PGA1_c23920 0.23 -0.7
2,496,602 + PGA1_c23920 0.32 +0.9
2,496,637 + PGA1_c23920 0.36 +0.9
2,496,659 + PGA1_c23920 0.39 +1.7
2,496,672 - PGA1_c23920 0.40 +1.9
2,496,793 - PGA1_c23920 0.56 +0.9
2,496,847 + PGA1_c23920 0.63 -0.7
2,496,905 - PGA1_c23920 0.70 -0.9
2,496,930 + PGA1_c23920 0.73 +1.1
2,496,975 + PGA1_c23920 0.79 -0.6
2,496,995 - PGA1_c23920 0.82 -0.9
2,497,159 + -1.2
2,497,213 - -1.0
2,497,213 - -0.7

Or see this region's nucleotide sequence