Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21220

Experiment: DinoMM minimal media with L-Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c21210 and PGA1_c21220 are separated by 529 nucleotidesPGA1_c21220 and PGA1_c21230 are separated by 67 nucleotidesPGA1_c21230 and PGA1_c21240 overlap by 4 nucleotidesPGA1_c21240 and PGA1_c21250 are separated by 109 nucleotides PGA1_c21210: PGA1_c21210 - putative lactoylglutathione lyase, at 2,196,317 to 2,196,745 _c21210 PGA1_c21220: PGA1_c21220 - transcriptional regulator, MarR family, at 2,197,275 to 2,197,778 _c21220 PGA1_c21230: PGA1_c21230 - Uncharacterized conserved protein, at 2,197,846 to 2,198,106 _c21230 PGA1_c21240: PGA1_c21240 - helix-turn-helix domain-containing protein, at 2,198,103 to 2,198,498 _c21240 PGA1_c21250: PGA1_c21250 - aspartate aminotransferase AatA, at 2,198,608 to 2,199,810 _c21250 Position (kb) 2197 2198Strain fitness (log2 ratio) -2 -1 0 1 2at 2196.280 kb on + strandat 2196.281 kb on + strandat 2196.281 kb on + strandat 2196.281 kb on + strandat 2196.289 kb on - strandat 2196.289 kb on - strandat 2196.289 kb on - strandat 2196.302 kb on - strandat 2196.418 kb on - strand, within PGA1_c21210at 2196.450 kb on - strand, within PGA1_c21210at 2196.482 kb on - strand, within PGA1_c21210at 2196.517 kb on + strand, within PGA1_c21210at 2196.555 kb on + strand, within PGA1_c21210at 2196.602 kb on - strand, within PGA1_c21210at 2196.702 kb on + strand, within PGA1_c21210at 2196.710 kb on + strandat 2196.710 kb on + strandat 2196.755 kb on - strandat 2196.764 kb on - strandat 2196.792 kb on - strandat 2196.792 kb on - strandat 2196.840 kb on + strandat 2196.849 kb on + strandat 2196.857 kb on - strandat 2196.857 kb on - strandat 2196.862 kb on + strandat 2196.864 kb on + strandat 2196.870 kb on - strandat 2196.993 kb on + strandat 2197.001 kb on - strandat 2197.083 kb on + strandat 2197.147 kb on + strandat 2197.295 kb on + strandat 2197.338 kb on - strand, within PGA1_c21220at 2197.520 kb on + strand, within PGA1_c21220at 2197.709 kb on + strand, within PGA1_c21220at 2197.881 kb on - strand, within PGA1_c21230at 2198.521 kb on + strandat 2198.541 kb on - strandat 2198.561 kb on - strandat 2198.566 kb on + strandat 2198.566 kb on + strandat 2198.566 kb on + strandat 2198.566 kb on + strandat 2198.566 kb on + strandat 2198.566 kb on + strandat 2198.566 kb on + strandat 2198.566 kb on + strandat 2198.574 kb on - strandat 2198.574 kb on - strandat 2198.574 kb on - strandat 2198.574 kb on - strandat 2198.574 kb on - strandat 2198.644 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
remove
2,196,280 + +1.2
2,196,281 + -0.5
2,196,281 + -1.8
2,196,281 + -1.3
2,196,289 - -0.5
2,196,289 - -1.1
2,196,289 - -0.3
2,196,302 - +0.7
2,196,418 - PGA1_c21210 0.24 +1.0
2,196,450 - PGA1_c21210 0.31 -0.5
2,196,482 - PGA1_c21210 0.38 +1.4
2,196,517 + PGA1_c21210 0.47 -0.4
2,196,555 + PGA1_c21210 0.55 -0.1
2,196,602 - PGA1_c21210 0.66 -1.7
2,196,702 + PGA1_c21210 0.90 +0.2
2,196,710 + +0.0
2,196,710 + +0.0
2,196,755 - -0.8
2,196,764 - +1.8
2,196,792 - +0.9
2,196,792 - -1.9
2,196,840 + -0.8
2,196,849 + +0.2
2,196,857 - -0.5
2,196,857 - +1.2
2,196,862 + -2.1
2,196,864 + -1.1
2,196,870 - -0.9
2,196,993 + -0.8
2,197,001 - +1.1
2,197,083 + +0.8
2,197,147 + -0.9
2,197,295 + -1.4
2,197,338 - PGA1_c21220 0.12 -1.3
2,197,520 + PGA1_c21220 0.49 -0.9
2,197,709 + PGA1_c21220 0.86 -1.1
2,197,881 - PGA1_c21230 0.13 +0.8
2,198,521 + -0.3
2,198,541 - -1.1
2,198,561 - -1.2
2,198,566 + -1.1
2,198,566 + -0.5
2,198,566 + +0.1
2,198,566 + -0.8
2,198,566 + -0.8
2,198,566 + +0.1
2,198,566 + -0.9
2,198,566 + -0.5
2,198,574 - -0.2
2,198,574 - -2.2
2,198,574 - -0.9
2,198,574 - -2.5
2,198,574 - -1.1
2,198,644 - -0.9

Or see this region's nucleotide sequence