Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20790

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20770 and PGA1_c20780 are separated by 3 nucleotidesPGA1_c20780 and PGA1_c20790 are separated by 136 nucleotidesPGA1_c20790 and PGA1_c20800 are separated by 184 nucleotidesPGA1_c20800 and PGA1_c20810 are separated by 202 nucleotides PGA1_c20770: PGA1_c20770 - phosphoadenosine phosphosulfate reductase CysH, at 2,154,113 to 2,154,892 _c20770 PGA1_c20780: PGA1_c20780 - Uncharacterized protein conserved in bacteria, at 2,154,896 to 2,155,294 _c20780 PGA1_c20790: PGA1_c20790 - ferredoxin--NADP reductase Fpr, at 2,155,431 to 2,156,306 _c20790 PGA1_c20800: PGA1_c20800 - hypothetical protein, at 2,156,491 to 2,157,006 _c20800 PGA1_c20810: PGA1_c20810 - MFS-type transporter, at 2,157,209 to 2,158,501 _c20810 Position (kb) 2155 2156 2157Strain fitness (log2 ratio) -2 -1 0 1 2at 2154.605 kb on + strand, within PGA1_c20770at 2155.294 kb on + strandat 2155.380 kb on + strandat 2156.389 kb on + strandat 2156.393 kb on + strandat 2156.395 kb on + strandat 2156.395 kb on + strandat 2156.395 kb on + strandat 2156.395 kb on + strandat 2156.395 kb on + strandat 2156.395 kb on + strandat 2156.395 kb on + strandat 2156.395 kb on + strandat 2156.397 kb on - strandat 2156.397 kb on - strandat 2156.403 kb on - strandat 2156.403 kb on - strandat 2156.403 kb on - strandat 2156.403 kb on - strandat 2156.403 kb on - strandat 2156.403 kb on - strandat 2156.450 kb on + strandat 2156.450 kb on + strandat 2156.456 kb on - strandat 2156.568 kb on - strand, within PGA1_c20800at 2156.661 kb on + strand, within PGA1_c20800at 2156.661 kb on + strand, within PGA1_c20800at 2156.674 kb on - strand, within PGA1_c20800at 2156.770 kb on + strand, within PGA1_c20800at 2156.770 kb on + strand, within PGA1_c20800at 2156.770 kb on + strand, within PGA1_c20800at 2156.778 kb on - strand, within PGA1_c20800at 2156.778 kb on - strand, within PGA1_c20800at 2156.788 kb on - strand, within PGA1_c20800at 2156.788 kb on - strand, within PGA1_c20800at 2156.813 kb on + strand, within PGA1_c20800at 2156.813 kb on + strand, within PGA1_c20800at 2156.813 kb on + strand, within PGA1_c20800at 2156.813 kb on + strand, within PGA1_c20800at 2156.813 kb on + strand, within PGA1_c20800at 2156.821 kb on - strand, within PGA1_c20800at 2156.821 kb on - strand, within PGA1_c20800at 2156.912 kb on + strand, within PGA1_c20800at 2156.913 kb on - strand, within PGA1_c20800at 2156.987 kb on - strandat 2157.079 kb on + strandat 2157.083 kb on - strandat 2157.134 kb on + strandat 2157.184 kb on - strandat 2157.193 kb on - strandat 2157.194 kb on - strandat 2157.194 kb on - strandat 2157.199 kb on + strandat 2157.199 kb on + strandat 2157.201 kb on - strandat 2157.239 kb on + strandat 2157.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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2,154,605 + PGA1_c20770 0.63 -0.6
2,155,294 + -0.2
2,155,380 + +0.1
2,156,389 + -0.2
2,156,393 + +1.3
2,156,395 + +0.1
2,156,395 + +1.4
2,156,395 + +0.6
2,156,395 + -1.4
2,156,395 + +0.6
2,156,395 + +0.7
2,156,395 + -2.3
2,156,395 + +0.8
2,156,397 - +0.4
2,156,397 - -1.6
2,156,403 - +1.4
2,156,403 - -0.2
2,156,403 - +0.8
2,156,403 - +0.6
2,156,403 - -0.6
2,156,403 - +0.4
2,156,450 + +0.4
2,156,450 + +0.9
2,156,456 - +2.1
2,156,568 - PGA1_c20800 0.15 +0.3
2,156,661 + PGA1_c20800 0.33 -0.8
2,156,661 + PGA1_c20800 0.33 +0.9
2,156,674 - PGA1_c20800 0.35 +0.2
2,156,770 + PGA1_c20800 0.54 -2.4
2,156,770 + PGA1_c20800 0.54 +1.4
2,156,770 + PGA1_c20800 0.54 +0.4
2,156,778 - PGA1_c20800 0.56 -0.3
2,156,778 - PGA1_c20800 0.56 -0.4
2,156,788 - PGA1_c20800 0.58 -0.1
2,156,788 - PGA1_c20800 0.58 -0.3
2,156,813 + PGA1_c20800 0.62 +0.2
2,156,813 + PGA1_c20800 0.62 +0.4
2,156,813 + PGA1_c20800 0.62 -0.4
2,156,813 + PGA1_c20800 0.62 +0.4
2,156,813 + PGA1_c20800 0.62 -0.2
2,156,821 - PGA1_c20800 0.64 +0.7
2,156,821 - PGA1_c20800 0.64 -0.1
2,156,912 + PGA1_c20800 0.82 +1.0
2,156,913 - PGA1_c20800 0.82 +0.9
2,156,987 - +0.6
2,157,079 + -0.8
2,157,083 - -0.4
2,157,134 + -0.2
2,157,184 - -0.5
2,157,193 - +0.1
2,157,194 - +0.5
2,157,194 - +0.1
2,157,199 + -0.2
2,157,199 + -0.2
2,157,201 - +0.5
2,157,239 + +0.5
2,157,257 - -0.0

Or see this region's nucleotide sequence