Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c20770 and PGA1_c20780 are separated by 3 nucleotides PGA1_c20780 and PGA1_c20790 are separated by 136 nucleotides PGA1_c20790 and PGA1_c20800 are separated by 184 nucleotides PGA1_c20800 and PGA1_c20810 are separated by 202 nucleotides
PGA1_c20770: PGA1_c20770 - phosphoadenosine phosphosulfate reductase CysH, at 2,154,113 to 2,154,892
_c20770
PGA1_c20780: PGA1_c20780 - Uncharacterized protein conserved in bacteria, at 2,154,896 to 2,155,294
_c20780
PGA1_c20790: PGA1_c20790 - ferredoxin--NADP reductase Fpr, at 2,155,431 to 2,156,306
_c20790
PGA1_c20800: PGA1_c20800 - hypothetical protein, at 2,156,491 to 2,157,006
_c20800
PGA1_c20810: PGA1_c20810 - MFS-type transporter, at 2,157,209 to 2,158,501
_c20810
Position (kb)
2155
2156
2157 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2154.605 kb on + strand, within PGA1_c20770 at 2155.294 kb on + strand at 2155.380 kb on + strand at 2156.389 kb on + strand at 2156.393 kb on + strand at 2156.395 kb on + strand at 2156.395 kb on + strand at 2156.395 kb on + strand at 2156.395 kb on + strand at 2156.395 kb on + strand at 2156.395 kb on + strand at 2156.395 kb on + strand at 2156.395 kb on + strand at 2156.397 kb on - strand at 2156.397 kb on - strand at 2156.403 kb on - strand at 2156.403 kb on - strand at 2156.403 kb on - strand at 2156.403 kb on - strand at 2156.403 kb on - strand at 2156.403 kb on - strand at 2156.450 kb on + strand at 2156.450 kb on + strand at 2156.456 kb on - strand at 2156.568 kb on - strand, within PGA1_c20800 at 2156.661 kb on + strand, within PGA1_c20800 at 2156.661 kb on + strand, within PGA1_c20800 at 2156.674 kb on - strand, within PGA1_c20800 at 2156.770 kb on + strand, within PGA1_c20800 at 2156.770 kb on + strand, within PGA1_c20800 at 2156.770 kb on + strand, within PGA1_c20800 at 2156.778 kb on - strand, within PGA1_c20800 at 2156.778 kb on - strand, within PGA1_c20800 at 2156.788 kb on - strand, within PGA1_c20800 at 2156.788 kb on - strand, within PGA1_c20800 at 2156.813 kb on + strand, within PGA1_c20800 at 2156.813 kb on + strand, within PGA1_c20800 at 2156.813 kb on + strand, within PGA1_c20800 at 2156.813 kb on + strand, within PGA1_c20800 at 2156.813 kb on + strand, within PGA1_c20800 at 2156.821 kb on - strand, within PGA1_c20800 at 2156.821 kb on - strand, within PGA1_c20800 at 2156.912 kb on + strand, within PGA1_c20800 at 2156.913 kb on - strand, within PGA1_c20800 at 2156.987 kb on - strand at 2157.079 kb on + strand at 2157.083 kb on - strand at 2157.134 kb on + strand at 2157.184 kb on - strand at 2157.193 kb on - strand at 2157.194 kb on - strand at 2157.194 kb on - strand at 2157.199 kb on + strand at 2157.199 kb on + strand at 2157.201 kb on - strand at 2157.239 kb on + strand at 2157.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 2,154,605 + PGA1_c20770 0.63 -0.6 2,155,294 + -0.2 2,155,380 + +0.1 2,156,389 + -0.2 2,156,393 + +1.3 2,156,395 + +0.1 2,156,395 + +1.4 2,156,395 + +0.6 2,156,395 + -1.4 2,156,395 + +0.6 2,156,395 + +0.7 2,156,395 + -2.3 2,156,395 + +0.8 2,156,397 - +0.4 2,156,397 - -1.6 2,156,403 - +1.4 2,156,403 - -0.2 2,156,403 - +0.8 2,156,403 - +0.6 2,156,403 - -0.6 2,156,403 - +0.4 2,156,450 + +0.4 2,156,450 + +0.9 2,156,456 - +2.1 2,156,568 - PGA1_c20800 0.15 +0.3 2,156,661 + PGA1_c20800 0.33 -0.8 2,156,661 + PGA1_c20800 0.33 +0.9 2,156,674 - PGA1_c20800 0.35 +0.2 2,156,770 + PGA1_c20800 0.54 -2.4 2,156,770 + PGA1_c20800 0.54 +1.4 2,156,770 + PGA1_c20800 0.54 +0.4 2,156,778 - PGA1_c20800 0.56 -0.3 2,156,778 - PGA1_c20800 0.56 -0.4 2,156,788 - PGA1_c20800 0.58 -0.1 2,156,788 - PGA1_c20800 0.58 -0.3 2,156,813 + PGA1_c20800 0.62 +0.2 2,156,813 + PGA1_c20800 0.62 +0.4 2,156,813 + PGA1_c20800 0.62 -0.4 2,156,813 + PGA1_c20800 0.62 +0.4 2,156,813 + PGA1_c20800 0.62 -0.2 2,156,821 - PGA1_c20800 0.64 +0.7 2,156,821 - PGA1_c20800 0.64 -0.1 2,156,912 + PGA1_c20800 0.82 +1.0 2,156,913 - PGA1_c20800 0.82 +0.9 2,156,987 - +0.6 2,157,079 + -0.8 2,157,083 - -0.4 2,157,134 + -0.2 2,157,184 - -0.5 2,157,193 - +0.1 2,157,194 - +0.5 2,157,194 - +0.1 2,157,199 + -0.2 2,157,199 + -0.2 2,157,201 - +0.5 2,157,239 + +0.5 2,157,257 - -0.0
Or see this region's nucleotide sequence