Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01930 and PGA1_c01940 are separated by 135 nucleotides PGA1_c01940 and PGA1_c01950 are separated by 11 nucleotides PGA1_c01950 and PGA1_c01960 are separated by 14 nucleotides PGA1_c01960 and PGA1_c01970 are separated by 4 nucleotides
PGA1_c01930: PGA1_c01930 - replication-associated recombination protein A, at 176,082 to 177,404
_c01930
PGA1_c01940: PGA1_c01940 - crcB-like protein, at 177,540 to 177,920
_c01940
PGA1_c01950: PGA1_c01950 - ribosomal large subunit pseudouridine synthase C, at 177,932 to 178,963
_c01950
PGA1_c01960: PGA1_c01960 - putative hydrolase, at 178,978 to 179,646
_c01960
PGA1_c01970: PGA1_c01970 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 179,651 to 180,358
_c01970
Position (kb) 177
178
179 Strain fitness (log2 ratio) -1
0
1 at 177.031 kb on - strand, within PGA1_c01930 at 177.034 kb on + strand, within PGA1_c01930 at 177.074 kb on + strand, within PGA1_c01930 at 177.177 kb on + strand, within PGA1_c01930 at 177.224 kb on + strand, within PGA1_c01930 at 177.233 kb on - strand, within PGA1_c01930 at 177.320 kb on - strand at 177.393 kb on + strand at 177.431 kb on - strand at 177.564 kb on + strand at 177.564 kb on + strand at 177.633 kb on - strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.720 kb on + strand, within PGA1_c01940 at 177.728 kb on - strand, within PGA1_c01940 at 178.917 kb on + strand at 179.127 kb on + strand, within PGA1_c01960 at 179.127 kb on + strand, within PGA1_c01960 at 179.127 kb on + strand, within PGA1_c01960 at 179.135 kb on - strand, within PGA1_c01960 at 179.207 kb on - strand, within PGA1_c01960 at 179.236 kb on + strand, within PGA1_c01960 at 179.294 kb on - strand, within PGA1_c01960 at 179.355 kb on + strand, within PGA1_c01960 at 179.631 kb on + strand at 179.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 177,031 - PGA1_c01930 0.72 +0.6 177,034 + PGA1_c01930 0.72 +1.6 177,074 + PGA1_c01930 0.75 -0.1 177,177 + PGA1_c01930 0.83 -1.0 177,224 + PGA1_c01930 0.86 -0.7 177,233 - PGA1_c01930 0.87 -0.4 177,320 - +0.9 177,393 + +0.4 177,431 - -0.9 177,564 + -0.0 177,564 + -0.6 177,633 - PGA1_c01940 0.24 +1.0 177,720 + PGA1_c01940 0.47 +0.3 177,720 + PGA1_c01940 0.47 -0.8 177,720 + PGA1_c01940 0.47 +1.6 177,728 - PGA1_c01940 0.49 -0.0 178,917 + +0.3 179,127 + PGA1_c01960 0.22 -0.0 179,127 + PGA1_c01960 0.22 +0.4 179,127 + PGA1_c01960 0.22 +1.6 179,135 - PGA1_c01960 0.23 -0.2 179,207 - PGA1_c01960 0.34 +1.0 179,236 + PGA1_c01960 0.39 +0.3 179,294 - PGA1_c01960 0.47 +0.8 179,355 + PGA1_c01960 0.56 -0.6 179,631 + +0.4 179,653 - -0.4
Or see this region's nucleotide sequence