Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17690

Experiment: DinoMM minimal media with L-Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c17670 and PGA1_c17680 are separated by 126 nucleotidesPGA1_c17680 and PGA1_c17690 are separated by 450 nucleotidesPGA1_c17690 and PGA1_c17700 are separated by 292 nucleotidesPGA1_c17700 and PGA1_c17710 are separated by 12 nucleotides PGA1_c17670: PGA1_c17670 - transcriptional regulator, crp family, at 1,850,475 to 1,851,233 _c17670 PGA1_c17680: PGA1_c17680 - hypothetical protein, at 1,851,360 to 1,851,596 _c17680 PGA1_c17690: PGA1_c17690 - serine acetyltransferase CysE, at 1,852,047 to 1,852,862 _c17690 PGA1_c17700: PGA1_c17700 - hypothetical protein, at 1,853,155 to 1,853,451 _c17700 PGA1_c17710: PGA1_c17710 - putative gene transfer agent protein, at 1,853,464 to 1,857,432 _c17710 Position (kb) 1852 1853Strain fitness (log2 ratio) -2 -1 0 1 2at 1851.053 kb on - strand, within PGA1_c17670at 1851.134 kb on + strand, within PGA1_c17670at 1851.134 kb on - strand, within PGA1_c17670at 1851.134 kb on - strand, within PGA1_c17670at 1851.222 kb on - strandat 1851.222 kb on - strandat 1851.223 kb on - strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.252 kb on - strandat 1851.252 kb on - strandat 1851.254 kb on + strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.259 kb on + strandat 1851.270 kb on + strandat 1851.270 kb on + strandat 1851.270 kb on + strandat 1851.270 kb on + strandat 1851.278 kb on - strandat 1851.311 kb on - strandat 1851.388 kb on - strand, within PGA1_c17680at 1851.560 kb on + strand, within PGA1_c17680at 1851.676 kb on + strandat 1851.681 kb on + strandat 1851.682 kb on - strandat 1851.836 kb on + strandat 1851.859 kb on - strandat 1851.911 kb on + strandat 1851.954 kb on + strandat 1852.020 kb on - strandat 1853.127 kb on + strandat 1853.150 kb on - strandat 1853.215 kb on - strand, within PGA1_c17700at 1853.215 kb on - strand, within PGA1_c17700at 1853.215 kb on - strand, within PGA1_c17700at 1853.249 kb on - strand, within PGA1_c17700at 1853.300 kb on + strand, within PGA1_c17700at 1853.313 kb on - strand, within PGA1_c17700at 1853.436 kb on + strandat 1853.480 kb on - strandat 1853.530 kb on - strandat 1853.541 kb on + strandat 1853.601 kb on - strandat 1853.601 kb on - strandat 1853.624 kb on - strandat 1853.650 kb on + strandat 1853.775 kb on + strandat 1853.777 kb on + strandat 1853.783 kb on - strandat 1853.785 kb on + strandat 1853.817 kb on + strandat 1853.835 kb on - strandat 1853.835 kb on - strandat 1853.855 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
remove
1,851,053 - PGA1_c17670 0.76 -1.1
1,851,134 + PGA1_c17670 0.87 -0.0
1,851,134 - PGA1_c17670 0.87 +0.2
1,851,134 - PGA1_c17670 0.87 +0.7
1,851,222 - +0.4
1,851,222 - +0.7
1,851,223 - +1.4
1,851,249 + -2.6
1,851,249 + -1.0
1,851,249 + +1.2
1,851,249 + -0.8
1,851,249 + +0.6
1,851,249 + -0.3
1,851,249 + +1.7
1,851,249 + +0.3
1,851,252 - -0.2
1,851,252 - -1.5
1,851,254 + +1.1
1,851,257 - -0.3
1,851,257 - +0.6
1,851,257 - -0.6
1,851,257 - +0.1
1,851,257 - -0.1
1,851,259 + +1.2
1,851,270 + +0.7
1,851,270 + -0.2
1,851,270 + -1.8
1,851,270 + -1.3
1,851,278 - +0.5
1,851,311 - -0.4
1,851,388 - PGA1_c17680 0.12 -0.3
1,851,560 + PGA1_c17680 0.84 +0.0
1,851,676 + +0.7
1,851,681 + +0.4
1,851,682 - -0.8
1,851,836 + -0.9
1,851,859 - +0.8
1,851,911 + +0.2
1,851,954 + -1.9
1,852,020 - -0.7
1,853,127 + +0.7
1,853,150 - +0.5
1,853,215 - PGA1_c17700 0.20 -1.0
1,853,215 - PGA1_c17700 0.20 +2.0
1,853,215 - PGA1_c17700 0.20 +1.2
1,853,249 - PGA1_c17700 0.32 -0.9
1,853,300 + PGA1_c17700 0.49 +0.4
1,853,313 - PGA1_c17700 0.53 +0.3
1,853,436 + -0.0
1,853,480 - +0.6
1,853,530 - +0.2
1,853,541 + +0.1
1,853,601 - -0.1
1,853,601 - +0.3
1,853,624 - +0.9
1,853,650 + +0.1
1,853,775 + +0.0
1,853,777 + +0.5
1,853,783 - -0.9
1,853,785 + -0.4
1,853,817 + -0.6
1,853,835 - -0.9
1,853,835 - -0.4
1,853,855 + -0.1

Or see this region's nucleotide sequence