Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16960 and PGA1_c16970 are separated by 126 nucleotides PGA1_c16970 and PGA1_c16980 are separated by 330 nucleotides
PGA1_c16960: PGA1_c16960 - glutamyl-tRNA synthetase GltX, at 1,771,064 to 1,772,464
_c16960
PGA1_c16970: PGA1_c16970 - citrate synthase GltA, at 1,772,591 to 1,773,886
_c16970
PGA1_c16980: PGA1_c16980 - Hemolysin-type calcium-binding repeat (2 copies)., at 1,774,217 to 1,775,113
_c16980
Position (kb)
1772
1773
1774 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1773.885 kb on + strand at 1773.970 kb on - strand at 1773.992 kb on + strand at 1773.992 kb on + strand at 1773.995 kb on - strand at 1774.043 kb on - strand at 1774.102 kb on + strand at 1774.140 kb on + strand at 1774.148 kb on - strand at 1774.166 kb on + strand at 1774.168 kb on + strand at 1774.186 kb on - strand at 1774.197 kb on + strand at 1774.242 kb on + strand at 1774.242 kb on + strand at 1774.242 kb on + strand at 1774.242 kb on + strand at 1774.245 kb on - strand at 1774.245 kb on - strand at 1774.245 kb on - strand at 1774.250 kb on - strand at 1774.250 kb on - strand at 1774.250 kb on - strand at 1774.250 kb on - strand at 1774.250 kb on - strand at 1774.250 kb on - strand at 1774.252 kb on + strand at 1774.275 kb on - strand at 1774.423 kb on + strand, within PGA1_c16980 at 1774.575 kb on - strand, within PGA1_c16980 at 1774.575 kb on - strand, within PGA1_c16980 at 1774.632 kb on + strand, within PGA1_c16980 at 1774.633 kb on - strand, within PGA1_c16980 at 1774.688 kb on + strand, within PGA1_c16980 at 1774.713 kb on + strand, within PGA1_c16980 at 1774.723 kb on + strand, within PGA1_c16980 at 1774.731 kb on - strand, within PGA1_c16980 at 1774.731 kb on - strand, within PGA1_c16980 at 1774.735 kb on + strand, within PGA1_c16980 at 1774.748 kb on - strand, within PGA1_c16980 at 1774.796 kb on + strand, within PGA1_c16980 at 1774.796 kb on + strand, within PGA1_c16980 at 1774.804 kb on - strand, within PGA1_c16980 at 1774.804 kb on - strand, within PGA1_c16980
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,773,885 + +0.2 1,773,970 - +0.1 1,773,992 + +0.5 1,773,992 + +2.1 1,773,995 - +1.4 1,774,043 - +0.6 1,774,102 + +1.4 1,774,140 + -1.1 1,774,148 - -0.3 1,774,166 + -0.2 1,774,168 + -0.4 1,774,186 - +0.4 1,774,197 + -0.3 1,774,242 + -1.9 1,774,242 + +0.5 1,774,242 + -0.2 1,774,242 + +0.0 1,774,245 - -1.8 1,774,245 - -1.7 1,774,245 - +0.5 1,774,250 - -1.4 1,774,250 - -0.8 1,774,250 - -0.0 1,774,250 - +0.2 1,774,250 - +1.8 1,774,250 - -0.9 1,774,252 + -1.5 1,774,275 - +0.6 1,774,423 + PGA1_c16980 0.23 +0.7 1,774,575 - PGA1_c16980 0.40 +0.9 1,774,575 - PGA1_c16980 0.40 +1.7 1,774,632 + PGA1_c16980 0.46 +1.0 1,774,633 - PGA1_c16980 0.46 -0.4 1,774,688 + PGA1_c16980 0.53 -0.9 1,774,713 + PGA1_c16980 0.55 +0.8 1,774,723 + PGA1_c16980 0.56 +0.8 1,774,731 - PGA1_c16980 0.57 +1.8 1,774,731 - PGA1_c16980 0.57 +0.5 1,774,735 + PGA1_c16980 0.58 +0.5 1,774,748 - PGA1_c16980 0.59 +0.4 1,774,796 + PGA1_c16980 0.65 -1.8 1,774,796 + PGA1_c16980 0.65 +0.3 1,774,804 - PGA1_c16980 0.65 +0.4 1,774,804 - PGA1_c16980 0.65 -0.4
Or see this region's nucleotide sequence