Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16890 and PGA1_c16900 overlap by 4 nucleotides PGA1_c16900 and PGA1_c16910 are separated by 14 nucleotides PGA1_c16910 and PGA1_c16920 overlap by 1 nucleotides PGA1_c16920 and PGA1_c16930 are separated by 0 nucleotides
PGA1_c16890: PGA1_c16890 - anthranilate phosphoribosyltransferase TrpD, at 1,763,636 to 1,764,664
_c16890
PGA1_c16900: PGA1_c16900 - uracil-DNA glycosylase Ung, at 1,764,661 to 1,765,314
_c16900
PGA1_c16910: PGA1_c16910 - indole-3-glycerol phosphate synthase TrpC, at 1,765,329 to 1,766,141
_c16910
PGA1_c16920: PGA1_c16920 - molybdenum cofactor biosynthesis protein C, at 1,766,141 to 1,766,611
_c16920
PGA1_c16930: PGA1_c16930 - molybdopterin biosynthesis protein MoeA, at 1,766,612 to 1,767,784
_c16930
Position (kb) 1765
1766
1767 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1764.859 kb on - strand, within PGA1_c16900 at 1765.189 kb on + strand, within PGA1_c16900 at 1765.189 kb on + strand, within PGA1_c16900 at 1765.192 kb on - strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.206 kb on + strand, within PGA1_c16900 at 1765.214 kb on - strand, within PGA1_c16900 at 1765.214 kb on - strand, within PGA1_c16900 at 1765.216 kb on - strand, within PGA1_c16900 at 1765.290 kb on + strand at 1766.364 kb on + strand, within PGA1_c16920 at 1766.396 kb on + strand, within PGA1_c16920 at 1766.494 kb on + strand, within PGA1_c16920 at 1766.676 kb on + strand at 1766.809 kb on + strand, within PGA1_c16930 at 1766.957 kb on + strand, within PGA1_c16930 at 1767.041 kb on - strand, within PGA1_c16930 at 1767.041 kb on - strand, within PGA1_c16930
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,764,859 - PGA1_c16900 0.30 -1.1 1,765,189 + PGA1_c16900 0.81 -1.6 1,765,189 + PGA1_c16900 0.81 -0.0 1,765,192 - PGA1_c16900 0.81 -1.0 1,765,206 + PGA1_c16900 0.83 -0.3 1,765,206 + PGA1_c16900 0.83 -1.8 1,765,206 + PGA1_c16900 0.83 -1.6 1,765,206 + PGA1_c16900 0.83 -1.6 1,765,214 - PGA1_c16900 0.85 +0.1 1,765,214 - PGA1_c16900 0.85 -1.4 1,765,216 - PGA1_c16900 0.85 -2.4 1,765,290 + -0.8 1,766,364 + PGA1_c16920 0.47 +1.0 1,766,396 + PGA1_c16920 0.54 +0.6 1,766,494 + PGA1_c16920 0.75 -1.6 1,766,676 + +2.4 1,766,809 + PGA1_c16930 0.17 +0.9 1,766,957 + PGA1_c16930 0.29 -0.6 1,767,041 - PGA1_c16930 0.37 -0.3 1,767,041 - PGA1_c16930 0.37 +1.4
Or see this region's nucleotide sequence