Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01660 and PGA1_c01670 are separated by 73 nucleotides PGA1_c01670 and PGA1_c01680 are separated by 205 nucleotides PGA1_c01680 and PGA1_c01690 are separated by 12 nucleotides PGA1_c01690 and PGA1_c01700 are separated by 99 nucleotides PGA1_c01700 and PGA1_c01710 are separated by 2 nucleotides PGA1_c01710 and PGA1_c01720 overlap by 8 nucleotides
PGA1_c01660: PGA1_c01660 - hypothetical protein, at 158,899 to 159,243
_c01660
PGA1_c01670: PGA1_c01670 - hypothetical protein, at 159,317 to 159,691
_c01670
PGA1_c01680: PGA1_c01680 - 50S ribosomal protein L29, at 159,897 to 160,097
_c01680
PGA1_c01690: PGA1_c01690 - 30S ribosomal protein S17, at 160,110 to 160,340
_c01690
PGA1_c01700: PGA1_c01700 - 50S ribosomal protein L14, at 160,440 to 160,808
_c01700
PGA1_c01710: PGA1_c01710 - 50S ribosomal protein L24, at 160,811 to 161,122
_c01710
PGA1_c01720: PGA1_c01720 - 50S ribosomal protein L5, at 161,115 to 161,678
_c01720
Position (kb) 160
161 Strain fitness (log2 ratio) -2
-1
0
1 at 159.133 kb on + strand, within PGA1_c01660 at 159.133 kb on - strand, within PGA1_c01660 at 159.146 kb on - strand, within PGA1_c01660 at 159.146 kb on - strand, within PGA1_c01660 at 159.157 kb on + strand, within PGA1_c01660 at 159.159 kb on + strand, within PGA1_c01660 at 159.164 kb on - strand, within PGA1_c01660 at 159.167 kb on - strand, within PGA1_c01660 at 159.222 kb on + strand at 159.222 kb on + strand at 159.225 kb on - strand at 159.395 kb on - strand, within PGA1_c01670 at 159.395 kb on - strand, within PGA1_c01670 at 159.436 kb on - strand, within PGA1_c01670 at 159.538 kb on + strand, within PGA1_c01670 at 159.571 kb on - strand, within PGA1_c01670 at 159.576 kb on - strand, within PGA1_c01670 at 159.616 kb on - strand, within PGA1_c01670 at 159.661 kb on - strand at 159.674 kb on - strand at 159.674 kb on - strand at 159.676 kb on + strand at 159.676 kb on + strand at 159.683 kb on + strand at 159.696 kb on + strand at 159.714 kb on + strand at 159.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 159,133 + PGA1_c01660 0.68 -1.2 159,133 - PGA1_c01660 0.68 +0.8 159,146 - PGA1_c01660 0.72 -2.0 159,146 - PGA1_c01660 0.72 -1.2 159,157 + PGA1_c01660 0.75 +0.8 159,159 + PGA1_c01660 0.75 -0.0 159,164 - PGA1_c01660 0.77 +0.2 159,167 - PGA1_c01660 0.78 +1.0 159,222 + +0.3 159,222 + +0.6 159,225 - -0.1 159,395 - PGA1_c01670 0.21 +0.3 159,395 - PGA1_c01670 0.21 -0.6 159,436 - PGA1_c01670 0.32 -1.0 159,538 + PGA1_c01670 0.59 -0.7 159,571 - PGA1_c01670 0.68 -0.2 159,576 - PGA1_c01670 0.69 -0.4 159,616 - PGA1_c01670 0.80 +0.6 159,661 - -0.0 159,674 - +0.6 159,674 - -0.0 159,676 + -1.7 159,676 + -0.0 159,683 + +0.7 159,696 + -1.2 159,714 + -0.5 159,721 + +0.6
Or see this region's nucleotide sequence