Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15100 and PGA1_c15110 are separated by 91 nucleotides PGA1_c15110 and PGA1_c15120 are separated by 2 nucleotides
PGA1_c15100: PGA1_c15100 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 1,569,139 to 1,569,885
_c15100
PGA1_c15110: PGA1_c15110 - heme A synthase CtaA, at 1,569,977 to 1,571,125
_c15110
PGA1_c15120: PGA1_c15120 - thermostable carboxypeptidase 1, at 1,571,128 to 1,572,597
_c15120
Position (kb)
1569
1570
1571
1572 Strain fitness (log2 ratio)
-2
-1
0
1 at 1568.990 kb on + strand at 1569.083 kb on + strand at 1569.083 kb on + strand at 1569.091 kb on + strand at 1569.091 kb on + strand at 1569.091 kb on - strand at 1569.099 kb on - strand at 1569.101 kb on + strand at 1569.106 kb on + strand at 1569.108 kb on + strand at 1569.164 kb on + strand at 1569.279 kb on + strand, within PGA1_c15100 at 1569.287 kb on - strand, within PGA1_c15100 at 1569.425 kb on - strand, within PGA1_c15100 at 1569.469 kb on + strand, within PGA1_c15100 at 1569.469 kb on + strand, within PGA1_c15100 at 1569.587 kb on - strand, within PGA1_c15100 at 1569.587 kb on - strand, within PGA1_c15100 at 1569.691 kb on + strand, within PGA1_c15100 at 1569.779 kb on - strand, within PGA1_c15100 at 1569.808 kb on + strand, within PGA1_c15100 at 1569.818 kb on + strand at 1569.892 kb on + strand at 1569.910 kb on - strand at 1569.913 kb on + strand at 1569.923 kb on + strand at 1571.089 kb on + strand at 1571.168 kb on - strand at 1571.179 kb on + strand at 1571.343 kb on + strand, within PGA1_c15120 at 1571.378 kb on + strand, within PGA1_c15120 at 1571.398 kb on - strand, within PGA1_c15120 at 1571.435 kb on + strand, within PGA1_c15120 at 1571.549 kb on - strand, within PGA1_c15120 at 1571.557 kb on + strand, within PGA1_c15120 at 1571.593 kb on + strand, within PGA1_c15120 at 1571.603 kb on - strand, within PGA1_c15120 at 1571.625 kb on + strand, within PGA1_c15120 at 1571.648 kb on + strand, within PGA1_c15120 at 1571.648 kb on + strand, within PGA1_c15120 at 1571.656 kb on - strand, within PGA1_c15120 at 1571.736 kb on - strand, within PGA1_c15120 at 1571.827 kb on - strand, within PGA1_c15120 at 1571.951 kb on + strand, within PGA1_c15120 at 1571.961 kb on + strand, within PGA1_c15120 at 1571.963 kb on + strand, within PGA1_c15120 at 1571.971 kb on - strand, within PGA1_c15120
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,568,990 + -0.9 1,569,083 + -1.1 1,569,083 + -0.4 1,569,091 + -1.1 1,569,091 + +1.2 1,569,091 - +0.1 1,569,099 - +1.1 1,569,101 + +1.3 1,569,106 + -0.7 1,569,108 + -0.2 1,569,164 + -0.9 1,569,279 + PGA1_c15100 0.19 +0.2 1,569,287 - PGA1_c15100 0.20 +1.4 1,569,425 - PGA1_c15100 0.38 +0.7 1,569,469 + PGA1_c15100 0.44 -1.2 1,569,469 + PGA1_c15100 0.44 +0.4 1,569,587 - PGA1_c15100 0.60 -0.8 1,569,587 - PGA1_c15100 0.60 +0.1 1,569,691 + PGA1_c15100 0.74 +1.1 1,569,779 - PGA1_c15100 0.86 +0.4 1,569,808 + PGA1_c15100 0.90 -0.5 1,569,818 + -0.5 1,569,892 + -0.1 1,569,910 - +0.8 1,569,913 + -1.0 1,569,923 + +1.5 1,571,089 + +1.4 1,571,168 - -1.3 1,571,179 + -0.5 1,571,343 + PGA1_c15120 0.15 +1.1 1,571,378 + PGA1_c15120 0.17 +0.4 1,571,398 - PGA1_c15120 0.18 +0.6 1,571,435 + PGA1_c15120 0.21 +1.1 1,571,549 - PGA1_c15120 0.29 -0.7 1,571,557 + PGA1_c15120 0.29 +1.4 1,571,593 + PGA1_c15120 0.32 -0.9 1,571,603 - PGA1_c15120 0.32 -0.6 1,571,625 + PGA1_c15120 0.34 +0.2 1,571,648 + PGA1_c15120 0.35 +0.4 1,571,648 + PGA1_c15120 0.35 -1.8 1,571,656 - PGA1_c15120 0.36 -0.6 1,571,736 - PGA1_c15120 0.41 -1.5 1,571,827 - PGA1_c15120 0.48 -0.6 1,571,951 + PGA1_c15120 0.56 +0.6 1,571,961 + PGA1_c15120 0.57 -1.0 1,571,963 + PGA1_c15120 0.57 -1.9 1,571,971 - PGA1_c15120 0.57 -0.9
Or see this region's nucleotide sequence