Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15110

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15100 and PGA1_c15110 are separated by 91 nucleotidesPGA1_c15110 and PGA1_c15120 are separated by 2 nucleotides PGA1_c15100: PGA1_c15100 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 1,569,139 to 1,569,885 _c15100 PGA1_c15110: PGA1_c15110 - heme A synthase CtaA, at 1,569,977 to 1,571,125 _c15110 PGA1_c15120: PGA1_c15120 - thermostable carboxypeptidase 1, at 1,571,128 to 1,572,597 _c15120 Position (kb) 1569 1570 1571 1572Strain fitness (log2 ratio) -2 -1 0 1at 1568.990 kb on + strandat 1569.083 kb on + strandat 1569.083 kb on + strandat 1569.091 kb on + strandat 1569.091 kb on + strandat 1569.091 kb on - strandat 1569.099 kb on - strandat 1569.101 kb on + strandat 1569.106 kb on + strandat 1569.108 kb on + strandat 1569.164 kb on + strandat 1569.279 kb on + strand, within PGA1_c15100at 1569.287 kb on - strand, within PGA1_c15100at 1569.425 kb on - strand, within PGA1_c15100at 1569.469 kb on + strand, within PGA1_c15100at 1569.469 kb on + strand, within PGA1_c15100at 1569.587 kb on - strand, within PGA1_c15100at 1569.587 kb on - strand, within PGA1_c15100at 1569.691 kb on + strand, within PGA1_c15100at 1569.779 kb on - strand, within PGA1_c15100at 1569.808 kb on + strand, within PGA1_c15100at 1569.818 kb on + strandat 1569.892 kb on + strandat 1569.910 kb on - strandat 1569.913 kb on + strandat 1569.923 kb on + strandat 1571.089 kb on + strandat 1571.168 kb on - strandat 1571.179 kb on + strandat 1571.343 kb on + strand, within PGA1_c15120at 1571.378 kb on + strand, within PGA1_c15120at 1571.398 kb on - strand, within PGA1_c15120at 1571.435 kb on + strand, within PGA1_c15120at 1571.549 kb on - strand, within PGA1_c15120at 1571.557 kb on + strand, within PGA1_c15120at 1571.593 kb on + strand, within PGA1_c15120at 1571.603 kb on - strand, within PGA1_c15120at 1571.625 kb on + strand, within PGA1_c15120at 1571.648 kb on + strand, within PGA1_c15120at 1571.648 kb on + strand, within PGA1_c15120at 1571.656 kb on - strand, within PGA1_c15120at 1571.736 kb on - strand, within PGA1_c15120at 1571.827 kb on - strand, within PGA1_c15120at 1571.951 kb on + strand, within PGA1_c15120at 1571.961 kb on + strand, within PGA1_c15120at 1571.963 kb on + strand, within PGA1_c15120at 1571.971 kb on - strand, within PGA1_c15120

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,568,990 + -0.9
1,569,083 + -1.1
1,569,083 + -0.4
1,569,091 + -1.1
1,569,091 + +1.2
1,569,091 - +0.1
1,569,099 - +1.1
1,569,101 + +1.3
1,569,106 + -0.7
1,569,108 + -0.2
1,569,164 + -0.9
1,569,279 + PGA1_c15100 0.19 +0.2
1,569,287 - PGA1_c15100 0.20 +1.4
1,569,425 - PGA1_c15100 0.38 +0.7
1,569,469 + PGA1_c15100 0.44 -1.2
1,569,469 + PGA1_c15100 0.44 +0.4
1,569,587 - PGA1_c15100 0.60 -0.8
1,569,587 - PGA1_c15100 0.60 +0.1
1,569,691 + PGA1_c15100 0.74 +1.1
1,569,779 - PGA1_c15100 0.86 +0.4
1,569,808 + PGA1_c15100 0.90 -0.5
1,569,818 + -0.5
1,569,892 + -0.1
1,569,910 - +0.8
1,569,913 + -1.0
1,569,923 + +1.5
1,571,089 + +1.4
1,571,168 - -1.3
1,571,179 + -0.5
1,571,343 + PGA1_c15120 0.15 +1.1
1,571,378 + PGA1_c15120 0.17 +0.4
1,571,398 - PGA1_c15120 0.18 +0.6
1,571,435 + PGA1_c15120 0.21 +1.1
1,571,549 - PGA1_c15120 0.29 -0.7
1,571,557 + PGA1_c15120 0.29 +1.4
1,571,593 + PGA1_c15120 0.32 -0.9
1,571,603 - PGA1_c15120 0.32 -0.6
1,571,625 + PGA1_c15120 0.34 +0.2
1,571,648 + PGA1_c15120 0.35 +0.4
1,571,648 + PGA1_c15120 0.35 -1.8
1,571,656 - PGA1_c15120 0.36 -0.6
1,571,736 - PGA1_c15120 0.41 -1.5
1,571,827 - PGA1_c15120 0.48 -0.6
1,571,951 + PGA1_c15120 0.56 +0.6
1,571,961 + PGA1_c15120 0.57 -1.0
1,571,963 + PGA1_c15120 0.57 -1.9
1,571,971 - PGA1_c15120 0.57 -0.9

Or see this region's nucleotide sequence