Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14880 and PGA1_c14890 are separated by 102 nucleotides PGA1_c14890 and PGA1_c14900 are separated by 211 nucleotides PGA1_c14900 and PGA1_c14910 are separated by 201 nucleotides PGA1_c14910 and PGA1_c14920 are separated by 34 nucleotides
PGA1_c14880: PGA1_c14880 - putative 3-hydroxyisobutyrate dehydrogenase, at 1,545,186 to 1,546,058
_c14880
PGA1_c14890: PGA1_c14890 - Uncharacterized conserved protein, at 1,546,161 to 1,546,736
_c14890
PGA1_c14900: PGA1_c14900 - delta-aminolevulinic acid dehydratase HemB, at 1,546,948 to 1,547,946
_c14900
PGA1_c14910: PGA1_c14910 - hypothetical protein, at 1,548,148 to 1,548,672
_c14910
PGA1_c14920: PGA1_c14920 - transcription-repair-coupling factor Mfd, at 1,548,707 to 1,552,174
_c14920
Position (kb)
1546
1547
1548 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1546.021 kb on + strand at 1546.021 kb on + strand at 1546.021 kb on + strand at 1546.029 kb on - strand at 1546.029 kb on - strand at 1546.029 kb on - strand at 1546.029 kb on - strand at 1546.029 kb on - strand at 1546.029 kb on - strand at 1546.031 kb on + strand at 1546.031 kb on + strand at 1546.039 kb on - strand at 1546.039 kb on - strand at 1546.090 kb on + strand at 1546.090 kb on + strand at 1546.130 kb on + strand at 1546.154 kb on + strand at 1546.162 kb on - strand at 1546.162 kb on - strand at 1546.189 kb on - strand at 1546.224 kb on + strand, within PGA1_c14890 at 1546.305 kb on + strand, within PGA1_c14890 at 1546.372 kb on - strand, within PGA1_c14890 at 1546.440 kb on + strand, within PGA1_c14890 at 1546.440 kb on + strand, within PGA1_c14890 at 1546.479 kb on + strand, within PGA1_c14890 at 1546.680 kb on - strand at 1546.691 kb on + strand at 1546.758 kb on + strand at 1546.797 kb on + strand at 1548.086 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.114 kb on - strand at 1548.114 kb on - strand at 1548.131 kb on - strand at 1548.138 kb on + strand at 1548.156 kb on + strand at 1548.156 kb on - strand at 1548.181 kb on + strand at 1548.229 kb on + strand, within PGA1_c14910 at 1548.236 kb on - strand, within PGA1_c14910 at 1548.369 kb on + strand, within PGA1_c14910 at 1548.369 kb on + strand, within PGA1_c14910 at 1548.401 kb on + strand, within PGA1_c14910 at 1548.409 kb on - strand, within PGA1_c14910 at 1548.911 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,546,021 + -0.3 1,546,021 + +0.4 1,546,021 + -0.6 1,546,029 - -0.4 1,546,029 - -1.2 1,546,029 - +1.4 1,546,029 - -0.2 1,546,029 - -0.2 1,546,029 - +0.1 1,546,031 + +0.1 1,546,031 + +0.6 1,546,039 - -0.4 1,546,039 - +2.0 1,546,090 + +0.7 1,546,090 + +0.7 1,546,130 + +0.2 1,546,154 + -0.6 1,546,162 - +0.2 1,546,162 - -0.9 1,546,189 - -0.2 1,546,224 + PGA1_c14890 0.11 -2.3 1,546,305 + PGA1_c14890 0.25 -0.7 1,546,372 - PGA1_c14890 0.37 +0.6 1,546,440 + PGA1_c14890 0.48 -0.2 1,546,440 + PGA1_c14890 0.48 -0.6 1,546,479 + PGA1_c14890 0.55 -1.4 1,546,680 - -1.9 1,546,691 + -2.1 1,546,758 + -1.0 1,546,797 + +0.4 1,548,086 + -1.2 1,548,106 + +0.5 1,548,106 + +1.2 1,548,106 + +1.0 1,548,106 + -0.1 1,548,106 + +1.1 1,548,106 + +0.2 1,548,106 + +0.8 1,548,106 + +0.7 1,548,114 - +0.9 1,548,114 - -0.1 1,548,131 - +1.3 1,548,138 + +0.6 1,548,156 + -0.0 1,548,156 - +0.5 1,548,181 + +0.1 1,548,229 + PGA1_c14910 0.15 +0.3 1,548,236 - PGA1_c14910 0.17 -0.2 1,548,369 + PGA1_c14910 0.42 +0.8 1,548,369 + PGA1_c14910 0.42 -0.9 1,548,401 + PGA1_c14910 0.48 +0.6 1,548,409 - PGA1_c14910 0.50 +0.2 1,548,911 + +0.7
Or see this region's nucleotide sequence