Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14900

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c14880 and PGA1_c14890 are separated by 102 nucleotidesPGA1_c14890 and PGA1_c14900 are separated by 211 nucleotidesPGA1_c14900 and PGA1_c14910 are separated by 201 nucleotidesPGA1_c14910 and PGA1_c14920 are separated by 34 nucleotides PGA1_c14880: PGA1_c14880 - putative 3-hydroxyisobutyrate dehydrogenase, at 1,545,186 to 1,546,058 _c14880 PGA1_c14890: PGA1_c14890 - Uncharacterized conserved protein, at 1,546,161 to 1,546,736 _c14890 PGA1_c14900: PGA1_c14900 - delta-aminolevulinic acid dehydratase HemB, at 1,546,948 to 1,547,946 _c14900 PGA1_c14910: PGA1_c14910 - hypothetical protein, at 1,548,148 to 1,548,672 _c14910 PGA1_c14920: PGA1_c14920 - transcription-repair-coupling factor Mfd, at 1,548,707 to 1,552,174 _c14920 Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -2 -1 0 1 2at 1546.021 kb on + strandat 1546.021 kb on + strandat 1546.021 kb on + strandat 1546.029 kb on - strandat 1546.029 kb on - strandat 1546.029 kb on - strandat 1546.029 kb on - strandat 1546.029 kb on - strandat 1546.029 kb on - strandat 1546.031 kb on + strandat 1546.031 kb on + strandat 1546.039 kb on - strandat 1546.039 kb on - strandat 1546.090 kb on + strandat 1546.090 kb on + strandat 1546.130 kb on + strandat 1546.154 kb on + strandat 1546.162 kb on - strandat 1546.162 kb on - strandat 1546.189 kb on - strandat 1546.224 kb on + strand, within PGA1_c14890at 1546.305 kb on + strand, within PGA1_c14890at 1546.372 kb on - strand, within PGA1_c14890at 1546.440 kb on + strand, within PGA1_c14890at 1546.440 kb on + strand, within PGA1_c14890at 1546.479 kb on + strand, within PGA1_c14890at 1546.680 kb on - strandat 1546.691 kb on + strandat 1546.758 kb on + strandat 1546.797 kb on + strandat 1548.086 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.114 kb on - strandat 1548.114 kb on - strandat 1548.131 kb on - strandat 1548.138 kb on + strandat 1548.156 kb on + strandat 1548.156 kb on - strandat 1548.181 kb on + strandat 1548.229 kb on + strand, within PGA1_c14910at 1548.236 kb on - strand, within PGA1_c14910at 1548.369 kb on + strand, within PGA1_c14910at 1548.369 kb on + strand, within PGA1_c14910at 1548.401 kb on + strand, within PGA1_c14910at 1548.409 kb on - strand, within PGA1_c14910at 1548.911 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,546,021 + -0.3
1,546,021 + +0.4
1,546,021 + -0.6
1,546,029 - -0.4
1,546,029 - -1.2
1,546,029 - +1.4
1,546,029 - -0.2
1,546,029 - -0.2
1,546,029 - +0.1
1,546,031 + +0.1
1,546,031 + +0.6
1,546,039 - -0.4
1,546,039 - +2.0
1,546,090 + +0.7
1,546,090 + +0.7
1,546,130 + +0.2
1,546,154 + -0.6
1,546,162 - +0.2
1,546,162 - -0.9
1,546,189 - -0.2
1,546,224 + PGA1_c14890 0.11 -2.3
1,546,305 + PGA1_c14890 0.25 -0.7
1,546,372 - PGA1_c14890 0.37 +0.6
1,546,440 + PGA1_c14890 0.48 -0.2
1,546,440 + PGA1_c14890 0.48 -0.6
1,546,479 + PGA1_c14890 0.55 -1.4
1,546,680 - -1.9
1,546,691 + -2.1
1,546,758 + -1.0
1,546,797 + +0.4
1,548,086 + -1.2
1,548,106 + +0.5
1,548,106 + +1.2
1,548,106 + +1.0
1,548,106 + -0.1
1,548,106 + +1.1
1,548,106 + +0.2
1,548,106 + +0.8
1,548,106 + +0.7
1,548,114 - +0.9
1,548,114 - -0.1
1,548,131 - +1.3
1,548,138 + +0.6
1,548,156 + -0.0
1,548,156 - +0.5
1,548,181 + +0.1
1,548,229 + PGA1_c14910 0.15 +0.3
1,548,236 - PGA1_c14910 0.17 -0.2
1,548,369 + PGA1_c14910 0.42 +0.8
1,548,369 + PGA1_c14910 0.42 -0.9
1,548,401 + PGA1_c14910 0.48 +0.6
1,548,409 - PGA1_c14910 0.50 +0.2
1,548,911 + +0.7

Or see this region's nucleotide sequence