Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01380

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01370 and PGA1_c01380 are separated by 646 nucleotidesPGA1_c01380 and PGA1_c01400 are separated by 1 nucleotides PGA1_c01370: PGA1_c01370 - transcription antitermination protein NusG, at 129,738 to 130,271 _c01370 PGA1_c01380: PGA1_c01380 - 50S ribosomal protein L11, at 130,918 to 131,343 _c01380 PGA1_c01400: PGA1_c01400 - 50S ribosomal protein L1, at 131,345 to 132,043 _c01400 Position (kb) 130 131 132Strain fitness (log2 ratio) -1 0 1 2at 130.246 kb on + strandat 130.259 kb on - strandat 130.275 kb on + strandat 130.327 kb on + strandat 130.356 kb on + strandat 130.365 kb on - strandat 130.368 kb on + strandat 130.376 kb on - strandat 130.391 kb on + strandat 130.439 kb on + strandat 130.457 kb on - strandat 130.465 kb on + strandat 130.526 kb on + strandat 130.531 kb on + strandat 130.531 kb on + strandat 130.539 kb on - strandat 130.603 kb on - strandat 130.603 kb on - strandat 130.619 kb on + strandat 130.668 kb on + strandat 130.674 kb on + strandat 130.674 kb on + strandat 130.746 kb on + strandat 130.756 kb on + strandat 130.759 kb on - strandat 130.759 kb on - strandat 130.765 kb on - strandat 132.188 kb on + strandat 132.193 kb on + strandat 132.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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130,246 + +0.6
130,259 - -0.6
130,275 + +1.8
130,327 + +2.2
130,356 + -1.2
130,365 - -0.8
130,368 + +0.6
130,376 - +0.5
130,391 + -0.5
130,439 + -1.0
130,457 - +1.2
130,465 + -1.1
130,526 + -0.7
130,531 + +0.7
130,531 + +0.3
130,539 - -0.8
130,603 - -0.2
130,603 - -1.7
130,619 + -0.2
130,668 + +0.5
130,674 + +0.5
130,674 + -0.6
130,746 + +0.3
130,756 + +0.5
130,759 - -0.3
130,759 - -1.2
130,765 - -0.4
132,188 + +1.8
132,193 + -1.3
132,193 + +0.3

Or see this region's nucleotide sequence