Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12610

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c12600 and PGA1_c12610 are separated by 9 nucleotidesPGA1_c12610 and PGA1_c12620 are separated by 159 nucleotidesPGA1_c12620 and PGA1_c12630 are separated by 196 nucleotides PGA1_c12600: PGA1_c12600 - biotin carboxylase AccA, at 1,305,561 to 1,306,913 _c12600 PGA1_c12610: PGA1_c12610 - biotin carboxyl carrier protein of acetyl-CoA carboxylase AccB, at 1,306,923 to 1,307,420 _c12610 PGA1_c12620: PGA1_c12620 - putative transcriptional regulator, araC family, at 1,307,580 to 1,308,116 _c12620 PGA1_c12630: PGA1_c12630 - putative high-affinity branched-chain amino acid transport ATP-binding protein, at 1,308,313 to 1,309,068 _c12630 Position (kb) 1306 1307 1308Strain fitness (log2 ratio) -2 -1 0 1 2at 1307.479 kb on + strandat 1307.540 kb on + strandat 1307.576 kb on - strandat 1307.581 kb on - strandat 1307.581 kb on - strandat 1307.581 kb on - strandat 1307.581 kb on - strandat 1307.669 kb on - strand, within PGA1_c12620at 1307.725 kb on - strand, within PGA1_c12620at 1307.756 kb on + strand, within PGA1_c12620at 1307.756 kb on + strand, within PGA1_c12620at 1307.756 kb on + strand, within PGA1_c12620at 1307.756 kb on + strand, within PGA1_c12620at 1307.756 kb on + strand, within PGA1_c12620at 1307.760 kb on - strand, within PGA1_c12620at 1307.764 kb on - strand, within PGA1_c12620at 1307.764 kb on - strand, within PGA1_c12620at 1307.764 kb on - strand, within PGA1_c12620at 1307.764 kb on - strand, within PGA1_c12620at 1307.799 kb on + strand, within PGA1_c12620at 1307.884 kb on + strand, within PGA1_c12620at 1307.971 kb on + strand, within PGA1_c12620at 1307.971 kb on + strand, within PGA1_c12620at 1307.979 kb on - strand, within PGA1_c12620at 1307.979 kb on - strand, within PGA1_c12620at 1307.979 kb on - strand, within PGA1_c12620at 1307.979 kb on - strand, within PGA1_c12620at 1307.979 kb on - strand, within PGA1_c12620at 1307.988 kb on + strand, within PGA1_c12620at 1308.024 kb on - strand, within PGA1_c12620at 1308.124 kb on + strandat 1308.129 kb on + strandat 1308.134 kb on + strandat 1308.177 kb on + strandat 1308.196 kb on + strandat 1308.214 kb on - strandat 1308.260 kb on + strandat 1308.268 kb on - strandat 1308.296 kb on + strandat 1308.306 kb on + strandat 1308.332 kb on - strandat 1308.345 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,307,479 + +1.5
1,307,540 + -1.1
1,307,576 - +0.6
1,307,581 - +0.4
1,307,581 - +1.1
1,307,581 - -0.5
1,307,581 - +2.0
1,307,669 - PGA1_c12620 0.17 +0.1
1,307,725 - PGA1_c12620 0.27 -0.9
1,307,756 + PGA1_c12620 0.33 -2.4
1,307,756 + PGA1_c12620 0.33 -0.6
1,307,756 + PGA1_c12620 0.33 -0.8
1,307,756 + PGA1_c12620 0.33 -0.2
1,307,756 + PGA1_c12620 0.33 +1.1
1,307,760 - PGA1_c12620 0.34 -0.7
1,307,764 - PGA1_c12620 0.34 -0.5
1,307,764 - PGA1_c12620 0.34 -2.1
1,307,764 - PGA1_c12620 0.34 -0.1
1,307,764 - PGA1_c12620 0.34 +0.4
1,307,799 + PGA1_c12620 0.41 +1.0
1,307,884 + PGA1_c12620 0.57 +1.0
1,307,971 + PGA1_c12620 0.73 +0.6
1,307,971 + PGA1_c12620 0.73 -0.8
1,307,979 - PGA1_c12620 0.74 -0.0
1,307,979 - PGA1_c12620 0.74 -0.9
1,307,979 - PGA1_c12620 0.74 +0.9
1,307,979 - PGA1_c12620 0.74 -1.2
1,307,979 - PGA1_c12620 0.74 +0.8
1,307,988 + PGA1_c12620 0.76 +0.3
1,308,024 - PGA1_c12620 0.83 +0.9
1,308,124 + +1.1
1,308,129 + -0.6
1,308,134 + +0.2
1,308,177 + +0.5
1,308,196 + -1.8
1,308,214 - -0.1
1,308,260 + +0.7
1,308,268 - +1.1
1,308,296 + +0.1
1,308,306 + +0.9
1,308,332 - +0.3
1,308,345 - -0.2

Or see this region's nucleotide sequence