Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11260

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11250 and PGA1_c11255 are separated by 60 nucleotidesPGA1_c11255 and PGA1_c11260 are separated by 219 nucleotidesPGA1_c11260 and PGA1_c11270 are separated by 87 nucleotidesPGA1_c11270 and PGA1_c11280 are separated by 211 nucleotides PGA1_c11250: PGA1_c11250 - fatty acid/phospholipid synthesis protein PlsX, at 1,163,471 to 1,164,574 _c11250 PGA1_c11255: PGA1_c11255 - 50S ribosomal protein L32, at 1,164,635 to 1,164,841 _c11255 PGA1_c11260: PGA1_c11260 - Predicted metal-binding, possibly nucleic acid-binding protein, at 1,165,061 to 1,165,606 _c11260 PGA1_c11270: PGA1_c11270 - Small protein A (tmRNA-binding), at 1,165,694 to 1,166,161 _c11270 PGA1_c11280: PGA1_c11280 - Putative hemolysin, at 1,166,373 to 1,167,236 _c11280 Position (kb) 1165 1166Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1164.590 kb on - strandat 1165.695 kb on - strandat 1166.174 kb on + strandat 1166.182 kb on - strandat 1166.192 kb on + strandat 1166.192 kb on + strandat 1166.200 kb on - strandat 1166.244 kb on - strandat 1166.249 kb on - strandat 1166.333 kb on + strandat 1166.354 kb on + strandat 1166.354 kb on + strandat 1166.359 kb on + strandat 1166.364 kb on + strandat 1166.364 kb on + strandat 1166.367 kb on - strandat 1166.372 kb on - strandat 1166.429 kb on - strandat 1166.436 kb on - strandat 1166.436 kb on - strandat 1166.437 kb on + strandat 1166.444 kb on + strandat 1166.552 kb on + strand, within PGA1_c11280at 1166.575 kb on + strand, within PGA1_c11280at 1166.575 kb on + strand, within PGA1_c11280at 1166.575 kb on + strand, within PGA1_c11280at 1166.575 kb on + strand, within PGA1_c11280

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,164,590 - +0.0
1,165,695 - +0.4
1,166,174 + -0.5
1,166,182 - -0.6
1,166,192 + +1.3
1,166,192 + -0.2
1,166,200 - +0.5
1,166,244 - -1.2
1,166,249 - +0.6
1,166,333 + -0.6
1,166,354 + -0.2
1,166,354 + -1.6
1,166,359 + +3.0
1,166,364 + +0.0
1,166,364 + +0.3
1,166,367 - -1.5
1,166,372 - +0.9
1,166,429 - +0.6
1,166,436 - +0.6
1,166,436 - -1.9
1,166,437 + +0.1
1,166,444 + -0.3
1,166,552 + PGA1_c11280 0.21 +2.0
1,166,575 + PGA1_c11280 0.23 -0.1
1,166,575 + PGA1_c11280 0.23 -0.8
1,166,575 + PGA1_c11280 0.23 +0.4
1,166,575 + PGA1_c11280 0.23 -0.6

Or see this region's nucleotide sequence