Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11240

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11220 and PGA1_c11230 are separated by 29 nucleotidesPGA1_c11230 and PGA1_c11240 are separated by 119 nucleotidesPGA1_c11240 and PGA1_c11250 are separated by 15 nucleotides PGA1_c11220: PGA1_c11220 - Predicted transcriptional regulators, at 1,158,568 to 1,162,032 _c11220 PGA1_c11230: PGA1_c11230 - integration host factor subunit alpha, at 1,162,062 to 1,162,364 _c11230 PGA1_c11240: PGA1_c11240 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 1,162,484 to 1,163,455 _c11240 PGA1_c11250: PGA1_c11250 - fatty acid/phospholipid synthesis protein PlsX, at 1,163,471 to 1,164,574 _c11250 Position (kb) 1162 1163 1164Strain fitness (log2 ratio) -3 -2 -1 0 1at 1161.684 kb on + strand, within PGA1_c11220at 1161.724 kb on + strandat 1161.745 kb on - strandat 1161.862 kb on - strandat 1161.909 kb on - strandat 1161.931 kb on - strandat 1161.941 kb on - strandat 1161.964 kb on - strandat 1162.017 kb on - strandat 1162.033 kb on + strandat 1162.043 kb on + strandat 1162.043 kb on + strandat 1162.047 kb on - strandat 1162.059 kb on - strandat 1162.480 kb on + strandat 1163.531 kb on - strandat 1163.531 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,161,684 + PGA1_c11220 0.90 -0.6
1,161,724 + -1.3
1,161,745 - +1.4
1,161,862 - -0.2
1,161,909 - -0.0
1,161,931 - -1.8
1,161,941 - -1.4
1,161,964 - -2.8
1,162,017 - -0.6
1,162,033 + -2.9
1,162,043 + -0.8
1,162,043 + -1.2
1,162,047 - -0.5
1,162,059 - +0.1
1,162,480 + -0.9
1,163,531 - +1.4
1,163,531 - -0.2

Or see this region's nucleotide sequence