Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10410

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10400 and PGA1_c10410 overlap by 1 nucleotidesPGA1_c10410 and PGA1_c10420 are separated by 52 nucleotidesPGA1_c10420 and PGA1_c10430 are separated by 6 nucleotides PGA1_c10400: PGA1_c10400 - NADH-quinone oxidoreductase subunit D, at 1,076,945 to 1,078,159 _c10400 PGA1_c10410: PGA1_c10410 - NADH-quinone oxidoreductase chain 2, at 1,078,159 to 1,079,352 _c10410 PGA1_c10420: PGA1_c10420 - hypothetical protein, at 1,079,405 to 1,079,632 _c10420 PGA1_c10430: PGA1_c10430 - NADH-quinone oxidoreductase subunit F, at 1,079,639 to 1,080,937 _c10430 Position (kb) 1078 1079 1080Strain fitness (log2 ratio) -1 0 1at 1079.021 kb on + strand, within PGA1_c10410at 1079.319 kb on + strandat 1079.319 kb on + strandat 1079.374 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,079,021 + PGA1_c10410 0.72 -0.6
1,079,319 + +0.8
1,079,319 + -0.9
1,079,374 + -0.2

Or see this region's nucleotide sequence