Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10400

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10380 and PGA1_c10390 are separated by 24 nucleotidesPGA1_c10390 and PGA1_c10400 overlap by 4 nucleotidesPGA1_c10400 and PGA1_c10410 overlap by 1 nucleotides PGA1_c10380: PGA1_c10380 - NADH-quinone oxidoreductase subunit B, at 1,075,794 to 1,076,318 _c10380 PGA1_c10390: PGA1_c10390 - NADH-quinone oxidoreductase subunit C, at 1,076,343 to 1,076,948 _c10390 PGA1_c10400: PGA1_c10400 - NADH-quinone oxidoreductase subunit D, at 1,076,945 to 1,078,159 _c10400 PGA1_c10410: PGA1_c10410 - NADH-quinone oxidoreductase chain 2, at 1,078,159 to 1,079,352 _c10410 Position (kb) 1076 1077 1078 1079Strain fitness (log2 ratio) -1 0 1at 1079.021 kb on + strand, within PGA1_c10410

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,079,021 + PGA1_c10410 0.72 -0.6

Or see this region's nucleotide sequence