Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10230 and PGA1_c10240 overlap by 1 nucleotides PGA1_c10240 and PGA1_c10250 are separated by 132 nucleotides PGA1_c10250 and PGA1_c10260 are separated by 63 nucleotides
PGA1_c10230: PGA1_c10230 - glucosamine--fructose-6-phosphate aminotransferase GlmS, at 1,058,735 to 1,060,543
_c10230
PGA1_c10240: PGA1_c10240 - bifunctional enzyme GlmU, at 1,060,543 to 1,061,898
_c10240
PGA1_c10250: PGA1_c10250 - phosphoglycolate phosphatase-like protein, at 1,062,031 to 1,062,696
_c10250
PGA1_c10260: PGA1_c10260 - putative pyridoxal-phosphate-dependent aminotransferase, at 1,062,760 to 1,063,968
_c10260
Position (kb)
1060
1061
1062 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1061.954 kb on + strand at 1061.954 kb on + strand at 1061.962 kb on - strand at 1061.962 kb on - strand at 1062.013 kb on + strand at 1062.023 kb on + strand at 1062.069 kb on + strand at 1062.130 kb on - strand, within PGA1_c10250 at 1062.148 kb on + strand, within PGA1_c10250 at 1062.221 kb on + strand, within PGA1_c10250 at 1062.248 kb on - strand, within PGA1_c10250 at 1062.248 kb on - strand, within PGA1_c10250 at 1062.283 kb on - strand, within PGA1_c10250 at 1062.308 kb on + strand, within PGA1_c10250 at 1062.308 kb on + strand, within PGA1_c10250 at 1062.341 kb on + strand, within PGA1_c10250 at 1062.401 kb on + strand, within PGA1_c10250 at 1062.401 kb on + strand, within PGA1_c10250 at 1062.401 kb on + strand, within PGA1_c10250 at 1062.401 kb on + strand, within PGA1_c10250 at 1062.401 kb on + strand, within PGA1_c10250 at 1062.432 kb on + strand, within PGA1_c10250 at 1062.440 kb on - strand, within PGA1_c10250 at 1062.440 kb on - strand, within PGA1_c10250 at 1062.445 kb on + strand, within PGA1_c10250 at 1062.462 kb on + strand, within PGA1_c10250 at 1062.549 kb on + strand, within PGA1_c10250 at 1062.564 kb on - strand, within PGA1_c10250 at 1062.580 kb on - strand, within PGA1_c10250 at 1062.593 kb on + strand, within PGA1_c10250 at 1062.593 kb on + strand, within PGA1_c10250 at 1062.593 kb on + strand, within PGA1_c10250 at 1062.596 kb on - strand, within PGA1_c10250 at 1062.601 kb on - strand, within PGA1_c10250 at 1062.601 kb on - strand, within PGA1_c10250 at 1062.646 kb on - strand at 1062.651 kb on + strand at 1062.722 kb on + strand at 1062.722 kb on + strand at 1062.722 kb on + strand at 1062.722 kb on + strand at 1062.792 kb on + strand at 1062.792 kb on + strand at 1062.792 kb on + strand at 1062.799 kb on - strand at 1062.800 kb on - strand at 1062.800 kb on - strand at 1062.800 kb on - strand at 1062.817 kb on + strand at 1062.850 kb on + strand at 1062.860 kb on + strand at 1062.860 kb on + strand at 1062.860 kb on + strand at 1062.863 kb on + strand at 1062.868 kb on - strand at 1062.868 kb on - strand at 1062.886 kb on + strand, within PGA1_c10260
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 1,061,954 + -2.3 1,061,954 + +0.5 1,061,962 - -1.2 1,061,962 - +1.4 1,062,013 + -0.2 1,062,023 + +0.1 1,062,069 + -0.3 1,062,130 - PGA1_c10250 0.15 +2.2 1,062,148 + PGA1_c10250 0.18 +1.3 1,062,221 + PGA1_c10250 0.29 -1.6 1,062,248 - PGA1_c10250 0.33 -0.6 1,062,248 - PGA1_c10250 0.33 +0.3 1,062,283 - PGA1_c10250 0.38 -0.3 1,062,308 + PGA1_c10250 0.42 +0.4 1,062,308 + PGA1_c10250 0.42 +1.5 1,062,341 + PGA1_c10250 0.47 -0.2 1,062,401 + PGA1_c10250 0.56 +1.1 1,062,401 + PGA1_c10250 0.56 +0.7 1,062,401 + PGA1_c10250 0.56 +0.6 1,062,401 + PGA1_c10250 0.56 +0.4 1,062,401 + PGA1_c10250 0.56 +0.6 1,062,432 + PGA1_c10250 0.60 -0.0 1,062,440 - PGA1_c10250 0.61 +0.9 1,062,440 - PGA1_c10250 0.61 +1.4 1,062,445 + PGA1_c10250 0.62 -0.1 1,062,462 + PGA1_c10250 0.65 -0.0 1,062,549 + PGA1_c10250 0.78 +0.2 1,062,564 - PGA1_c10250 0.80 -0.9 1,062,580 - PGA1_c10250 0.82 -1.9 1,062,593 + PGA1_c10250 0.84 +1.5 1,062,593 + PGA1_c10250 0.84 -0.6 1,062,593 + PGA1_c10250 0.84 +0.1 1,062,596 - PGA1_c10250 0.85 -0.3 1,062,601 - PGA1_c10250 0.86 +0.4 1,062,601 - PGA1_c10250 0.86 +0.4 1,062,646 - +1.4 1,062,651 + -1.1 1,062,722 + -0.5 1,062,722 + +0.2 1,062,722 + +1.4 1,062,722 + +2.4 1,062,792 + +1.3 1,062,792 + +1.7 1,062,792 + +1.8 1,062,799 - +1.6 1,062,800 - +1.7 1,062,800 - -0.1 1,062,800 - +0.7 1,062,817 + +2.0 1,062,850 + +0.5 1,062,860 + +1.5 1,062,860 + +1.6 1,062,860 + +2.2 1,062,863 + +0.3 1,062,868 - +2.1 1,062,868 - +2.0 1,062,886 + PGA1_c10260 0.10 +1.8
Or see this region's nucleotide sequence