Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10240

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10230 and PGA1_c10240 overlap by 1 nucleotidesPGA1_c10240 and PGA1_c10250 are separated by 132 nucleotidesPGA1_c10250 and PGA1_c10260 are separated by 63 nucleotides PGA1_c10230: PGA1_c10230 - glucosamine--fructose-6-phosphate aminotransferase GlmS, at 1,058,735 to 1,060,543 _c10230 PGA1_c10240: PGA1_c10240 - bifunctional enzyme GlmU, at 1,060,543 to 1,061,898 _c10240 PGA1_c10250: PGA1_c10250 - phosphoglycolate phosphatase-like protein, at 1,062,031 to 1,062,696 _c10250 PGA1_c10260: PGA1_c10260 - putative pyridoxal-phosphate-dependent aminotransferase, at 1,062,760 to 1,063,968 _c10260 Position (kb) 1060 1061 1062Strain fitness (log2 ratio) -2 -1 0 1 2at 1061.954 kb on + strandat 1061.954 kb on + strandat 1061.962 kb on - strandat 1061.962 kb on - strandat 1062.013 kb on + strandat 1062.023 kb on + strandat 1062.069 kb on + strandat 1062.130 kb on - strand, within PGA1_c10250at 1062.148 kb on + strand, within PGA1_c10250at 1062.221 kb on + strand, within PGA1_c10250at 1062.248 kb on - strand, within PGA1_c10250at 1062.248 kb on - strand, within PGA1_c10250at 1062.283 kb on - strand, within PGA1_c10250at 1062.308 kb on + strand, within PGA1_c10250at 1062.308 kb on + strand, within PGA1_c10250at 1062.341 kb on + strand, within PGA1_c10250at 1062.401 kb on + strand, within PGA1_c10250at 1062.401 kb on + strand, within PGA1_c10250at 1062.401 kb on + strand, within PGA1_c10250at 1062.401 kb on + strand, within PGA1_c10250at 1062.401 kb on + strand, within PGA1_c10250at 1062.432 kb on + strand, within PGA1_c10250at 1062.440 kb on - strand, within PGA1_c10250at 1062.440 kb on - strand, within PGA1_c10250at 1062.445 kb on + strand, within PGA1_c10250at 1062.462 kb on + strand, within PGA1_c10250at 1062.549 kb on + strand, within PGA1_c10250at 1062.564 kb on - strand, within PGA1_c10250at 1062.580 kb on - strand, within PGA1_c10250at 1062.593 kb on + strand, within PGA1_c10250at 1062.593 kb on + strand, within PGA1_c10250at 1062.593 kb on + strand, within PGA1_c10250at 1062.596 kb on - strand, within PGA1_c10250at 1062.601 kb on - strand, within PGA1_c10250at 1062.601 kb on - strand, within PGA1_c10250at 1062.646 kb on - strandat 1062.651 kb on + strandat 1062.722 kb on + strandat 1062.722 kb on + strandat 1062.722 kb on + strandat 1062.722 kb on + strandat 1062.792 kb on + strandat 1062.792 kb on + strandat 1062.792 kb on + strandat 1062.799 kb on - strandat 1062.800 kb on - strandat 1062.800 kb on - strandat 1062.800 kb on - strandat 1062.817 kb on + strandat 1062.850 kb on + strandat 1062.860 kb on + strandat 1062.860 kb on + strandat 1062.860 kb on + strandat 1062.863 kb on + strandat 1062.868 kb on - strandat 1062.868 kb on - strandat 1062.886 kb on + strand, within PGA1_c10260

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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1,061,954 + -2.3
1,061,954 + +0.5
1,061,962 - -1.2
1,061,962 - +1.4
1,062,013 + -0.2
1,062,023 + +0.1
1,062,069 + -0.3
1,062,130 - PGA1_c10250 0.15 +2.2
1,062,148 + PGA1_c10250 0.18 +1.3
1,062,221 + PGA1_c10250 0.29 -1.6
1,062,248 - PGA1_c10250 0.33 -0.6
1,062,248 - PGA1_c10250 0.33 +0.3
1,062,283 - PGA1_c10250 0.38 -0.3
1,062,308 + PGA1_c10250 0.42 +0.4
1,062,308 + PGA1_c10250 0.42 +1.5
1,062,341 + PGA1_c10250 0.47 -0.2
1,062,401 + PGA1_c10250 0.56 +1.1
1,062,401 + PGA1_c10250 0.56 +0.7
1,062,401 + PGA1_c10250 0.56 +0.6
1,062,401 + PGA1_c10250 0.56 +0.4
1,062,401 + PGA1_c10250 0.56 +0.6
1,062,432 + PGA1_c10250 0.60 -0.0
1,062,440 - PGA1_c10250 0.61 +0.9
1,062,440 - PGA1_c10250 0.61 +1.4
1,062,445 + PGA1_c10250 0.62 -0.1
1,062,462 + PGA1_c10250 0.65 -0.0
1,062,549 + PGA1_c10250 0.78 +0.2
1,062,564 - PGA1_c10250 0.80 -0.9
1,062,580 - PGA1_c10250 0.82 -1.9
1,062,593 + PGA1_c10250 0.84 +1.5
1,062,593 + PGA1_c10250 0.84 -0.6
1,062,593 + PGA1_c10250 0.84 +0.1
1,062,596 - PGA1_c10250 0.85 -0.3
1,062,601 - PGA1_c10250 0.86 +0.4
1,062,601 - PGA1_c10250 0.86 +0.4
1,062,646 - +1.4
1,062,651 + -1.1
1,062,722 + -0.5
1,062,722 + +0.2
1,062,722 + +1.4
1,062,722 + +2.4
1,062,792 + +1.3
1,062,792 + +1.7
1,062,792 + +1.8
1,062,799 - +1.6
1,062,800 - +1.7
1,062,800 - -0.1
1,062,800 - +0.7
1,062,817 + +2.0
1,062,850 + +0.5
1,062,860 + +1.5
1,062,860 + +1.6
1,062,860 + +2.2
1,062,863 + +0.3
1,062,868 - +2.1
1,062,868 - +2.0
1,062,886 + PGA1_c10260 0.10 +1.8

Or see this region's nucleotide sequence