Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24535 and BWI76_RS24540 are separated by 8 nucleotides BWI76_RS24540 and BWI76_RS24545 are separated by 13 nucleotides BWI76_RS24545 and BWI76_RS24550 are separated by 233 nucleotides
BWI76_RS24535: BWI76_RS24535 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 5,114,929 to 5,115,942
_RS24535
BWI76_RS24540: BWI76_RS24540 - hypothetical protein, at 5,115,951 to 5,116,166
_RS24540
BWI76_RS24545: BWI76_RS24545 - 30S ribosomal protein S21, at 5,116,180 to 5,116,395
_RS24545
BWI76_RS24550: BWI76_RS24550 - DNA primase, at 5,116,629 to 5,118,374
_RS24550
Position (kb) 5115
5116
5117 Strain fitness (log2 ratio) -1
0
1
2 at 5115.956 kb on - strand at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5115.982 kb on - strand, within BWI76_RS24540 at 5116.003 kb on - strand, within BWI76_RS24540 at 5116.012 kb on + strand, within BWI76_RS24540 at 5116.017 kb on + strand, within BWI76_RS24540 at 5116.526 kb on + strand at 5116.531 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 5,115,956 - +1.0 5,115,982 - BWI76_RS24540 0.14 -1.7 5,115,982 - BWI76_RS24540 0.14 +1.0 5,115,982 - BWI76_RS24540 0.14 +0.2 5,115,982 - BWI76_RS24540 0.14 +0.5 5,115,982 - BWI76_RS24540 0.14 -0.8 5,115,982 - BWI76_RS24540 0.14 +0.7 5,115,982 - BWI76_RS24540 0.14 +2.4 5,116,003 - BWI76_RS24540 0.24 -0.1 5,116,012 + BWI76_RS24540 0.28 +0.5 5,116,017 + BWI76_RS24540 0.31 +1.7 5,116,526 + -0.3 5,116,531 + +0.1
Or see this region's nucleotide sequence