Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36905 and RR42_RS36910 are separated by 79 nucleotides RR42_RS36910 and RR42_RS36915 are separated by 47 nucleotides RR42_RS36915 and RR42_RS36920 are separated by 225 nucleotides RR42_RS36920 and RR42_RS36925 overlap by 4 nucleotides
RR42_RS36905: RR42_RS36905 - ArsR family transcriptional regulator, at 3,736,010 to 3,736,699
_RS36905
RR42_RS36910: RR42_RS36910 - hypothetical protein, at 3,736,779 to 3,737,288
_RS36910
RR42_RS36915: RR42_RS36915 - LysR family transcriptional regulator, at 3,737,336 to 3,738,265
_RS36915
RR42_RS36920: RR42_RS36920 - TetR family transcriptional regulator, at 3,738,491 to 3,739,204
_RS36920
RR42_RS36925: RR42_RS36925 - carotenoid oxygenase, at 3,739,201 to 3,740,595
_RS36925
Position (kb)
3737
3738
3739 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3736.361 kb on + strand, within RR42_RS36905 at 3736.406 kb on - strand, within RR42_RS36905 at 3736.406 kb on - strand, within RR42_RS36905 at 3736.406 kb on - strand, within RR42_RS36905 at 3736.406 kb on - strand, within RR42_RS36905 at 3736.601 kb on - strand, within RR42_RS36905 at 3736.980 kb on + strand, within RR42_RS36910 at 3736.980 kb on + strand, within RR42_RS36910 at 3736.980 kb on + strand, within RR42_RS36910 at 3736.980 kb on + strand, within RR42_RS36910 at 3736.980 kb on + strand, within RR42_RS36910 at 3736.981 kb on - strand, within RR42_RS36910 at 3736.981 kb on - strand, within RR42_RS36910 at 3736.981 kb on - strand, within RR42_RS36910 at 3736.981 kb on - strand, within RR42_RS36910 at 3736.981 kb on - strand, within RR42_RS36910 at 3736.981 kb on - strand, within RR42_RS36910 at 3737.191 kb on - strand, within RR42_RS36910 at 3737.284 kb on - strand at 3737.532 kb on + strand, within RR42_RS36915 at 3737.533 kb on - strand, within RR42_RS36915 at 3737.533 kb on - strand, within RR42_RS36915 at 3737.926 kb on + strand, within RR42_RS36915 at 3737.926 kb on + strand, within RR42_RS36915 at 3737.926 kb on + strand, within RR42_RS36915 at 3737.927 kb on - strand, within RR42_RS36915 at 3737.927 kb on - strand, within RR42_RS36915 at 3737.927 kb on - strand, within RR42_RS36915 at 3737.961 kb on + strand, within RR42_RS36915 at 3737.961 kb on + strand, within RR42_RS36915 at 3737.961 kb on + strand, within RR42_RS36915 at 3737.961 kb on + strand, within RR42_RS36915 at 3737.962 kb on - strand, within RR42_RS36915 at 3737.962 kb on - strand, within RR42_RS36915 at 3737.962 kb on - strand, within RR42_RS36915 at 3737.962 kb on - strand, within RR42_RS36915 at 3737.962 kb on - strand, within RR42_RS36915 at 3738.041 kb on - strand, within RR42_RS36915 at 3738.063 kb on + strand, within RR42_RS36915 at 3738.064 kb on + strand, within RR42_RS36915 at 3738.064 kb on - strand, within RR42_RS36915 at 3738.776 kb on + strand, within RR42_RS36920 at 3738.776 kb on + strand, within RR42_RS36920 at 3738.959 kb on + strand, within RR42_RS36920 at 3738.959 kb on + strand, within RR42_RS36920 at 3739.228 kb on + strand at 3739.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 3,736,361 + RR42_RS36905 0.51 -0.5 3,736,406 - RR42_RS36905 0.57 -0.0 3,736,406 - RR42_RS36905 0.57 +1.4 3,736,406 - RR42_RS36905 0.57 +1.2 3,736,406 - RR42_RS36905 0.57 +1.5 3,736,601 - RR42_RS36905 0.86 +0.5 3,736,980 + RR42_RS36910 0.39 -1.1 3,736,980 + RR42_RS36910 0.39 +0.9 3,736,980 + RR42_RS36910 0.39 +0.5 3,736,980 + RR42_RS36910 0.39 +0.6 3,736,980 + RR42_RS36910 0.39 -0.5 3,736,981 - RR42_RS36910 0.40 -0.3 3,736,981 - RR42_RS36910 0.40 -1.8 3,736,981 - RR42_RS36910 0.40 +0.0 3,736,981 - RR42_RS36910 0.40 -0.2 3,736,981 - RR42_RS36910 0.40 -1.6 3,736,981 - RR42_RS36910 0.40 -1.6 3,737,191 - RR42_RS36910 0.81 +0.8 3,737,284 - +2.2 3,737,532 + RR42_RS36915 0.21 -0.6 3,737,533 - RR42_RS36915 0.21 +0.2 3,737,533 - RR42_RS36915 0.21 -0.2 3,737,926 + RR42_RS36915 0.63 -1.3 3,737,926 + RR42_RS36915 0.63 -1.8 3,737,926 + RR42_RS36915 0.63 +0.3 3,737,927 - RR42_RS36915 0.64 -0.3 3,737,927 - RR42_RS36915 0.64 -0.3 3,737,927 - RR42_RS36915 0.64 +1.2 3,737,961 + RR42_RS36915 0.67 +1.2 3,737,961 + RR42_RS36915 0.67 +0.2 3,737,961 + RR42_RS36915 0.67 +0.2 3,737,961 + RR42_RS36915 0.67 -0.8 3,737,962 - RR42_RS36915 0.67 +1.2 3,737,962 - RR42_RS36915 0.67 +0.6 3,737,962 - RR42_RS36915 0.67 -1.5 3,737,962 - RR42_RS36915 0.67 -2.5 3,737,962 - RR42_RS36915 0.67 -2.5 3,738,041 - RR42_RS36915 0.76 -3.0 3,738,063 + RR42_RS36915 0.78 -0.8 3,738,064 + RR42_RS36915 0.78 +0.0 3,738,064 - RR42_RS36915 0.78 -1.1 3,738,776 + RR42_RS36920 0.40 -0.1 3,738,776 + RR42_RS36920 0.40 -0.6 3,738,959 + RR42_RS36920 0.66 -0.6 3,738,959 + RR42_RS36920 0.66 +3.1 3,739,228 + -0.2 3,739,229 - +0.2
Or see this region's nucleotide sequence