Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36505

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36500 and RR42_RS36505 are separated by 48 nucleotidesRR42_RS36505 and RR42_RS36510 are separated by 190 nucleotides RR42_RS36500: RR42_RS36500 - ABC transporter substrate-binding protein, at 3,645,342 to 3,646,328 _RS36500 RR42_RS36505: RR42_RS36505 - long-chain fatty acid--CoA ligase, at 3,646,377 to 3,648,119 _RS36505 RR42_RS36510: RR42_RS36510 - ABC transporter substrate-binding protein, at 3,648,310 to 3,649,302 _RS36510 Position (kb) 3646 3647 3648 3649Strain fitness (log2 ratio) -2 -1 0 1 2at 3645.675 kb on + strand, within RR42_RS36500at 3645.675 kb on + strand, within RR42_RS36500at 3645.675 kb on + strand, within RR42_RS36500at 3645.679 kb on + strand, within RR42_RS36500at 3645.680 kb on - strand, within RR42_RS36500at 3645.680 kb on - strand, within RR42_RS36500at 3645.680 kb on - strand, within RR42_RS36500at 3645.850 kb on + strand, within RR42_RS36500at 3645.850 kb on + strand, within RR42_RS36500at 3645.997 kb on + strand, within RR42_RS36500at 3645.998 kb on - strand, within RR42_RS36500at 3646.513 kb on + strandat 3646.514 kb on - strandat 3646.514 kb on - strandat 3646.514 kb on - strandat 3646.675 kb on + strand, within RR42_RS36505at 3646.676 kb on - strand, within RR42_RS36505at 3646.760 kb on - strand, within RR42_RS36505at 3646.760 kb on - strand, within RR42_RS36505at 3647.053 kb on + strand, within RR42_RS36505at 3647.125 kb on + strand, within RR42_RS36505at 3647.288 kb on - strand, within RR42_RS36505at 3647.420 kb on + strand, within RR42_RS36505at 3647.420 kb on + strand, within RR42_RS36505at 3647.421 kb on - strand, within RR42_RS36505at 3647.421 kb on - strand, within RR42_RS36505at 3647.421 kb on - strand, within RR42_RS36505at 3647.462 kb on - strand, within RR42_RS36505at 3647.821 kb on + strand, within RR42_RS36505at 3647.821 kb on + strand, within RR42_RS36505at 3647.822 kb on - strand, within RR42_RS36505at 3647.822 kb on - strand, within RR42_RS36505at 3647.824 kb on + strand, within RR42_RS36505at 3647.825 kb on - strand, within RR42_RS36505at 3647.944 kb on + strand, within RR42_RS36505at 3647.945 kb on - strandat 3647.945 kb on - strandat 3648.016 kb on + strandat 3648.017 kb on - strandat 3648.017 kb on - strandat 3648.017 kb on - strandat 3648.311 kb on + strandat 3648.488 kb on - strand, within RR42_RS36510at 3648.731 kb on + strand, within RR42_RS36510at 3648.732 kb on - strand, within RR42_RS36510at 3648.732 kb on - strand, within RR42_RS36510at 3648.783 kb on - strand, within RR42_RS36510at 3648.818 kb on + strand, within RR42_RS36510at 3648.818 kb on + strand, within RR42_RS36510at 3648.818 kb on + strand, within RR42_RS36510at 3648.819 kb on - strand, within RR42_RS36510at 3648.972 kb on - strand, within RR42_RS36510at 3649.005 kb on + strand, within RR42_RS36510at 3649.006 kb on - strand, within RR42_RS36510

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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3,645,675 + RR42_RS36500 0.34 -0.3
3,645,675 + RR42_RS36500 0.34 -1.1
3,645,675 + RR42_RS36500 0.34 +0.4
3,645,679 + RR42_RS36500 0.34 +0.1
3,645,680 - RR42_RS36500 0.34 -0.6
3,645,680 - RR42_RS36500 0.34 -0.0
3,645,680 - RR42_RS36500 0.34 -0.8
3,645,850 + RR42_RS36500 0.51 -0.3
3,645,850 + RR42_RS36500 0.51 -0.2
3,645,997 + RR42_RS36500 0.66 -1.0
3,645,998 - RR42_RS36500 0.66 +0.0
3,646,513 + -0.9
3,646,514 - -0.4
3,646,514 - +0.6
3,646,514 - -1.3
3,646,675 + RR42_RS36505 0.17 -0.2
3,646,676 - RR42_RS36505 0.17 -0.6
3,646,760 - RR42_RS36505 0.22 +0.3
3,646,760 - RR42_RS36505 0.22 -0.5
3,647,053 + RR42_RS36505 0.39 +0.7
3,647,125 + RR42_RS36505 0.43 +0.2
3,647,288 - RR42_RS36505 0.52 -0.5
3,647,420 + RR42_RS36505 0.60 -0.3
3,647,420 + RR42_RS36505 0.60 +0.9
3,647,421 - RR42_RS36505 0.60 +0.7
3,647,421 - RR42_RS36505 0.60 +0.3
3,647,421 - RR42_RS36505 0.60 -0.7
3,647,462 - RR42_RS36505 0.62 +0.7
3,647,821 + RR42_RS36505 0.83 +0.1
3,647,821 + RR42_RS36505 0.83 -0.2
3,647,822 - RR42_RS36505 0.83 -0.0
3,647,822 - RR42_RS36505 0.83 -0.0
3,647,824 + RR42_RS36505 0.83 +1.1
3,647,825 - RR42_RS36505 0.83 -0.4
3,647,944 + RR42_RS36505 0.90 -2.7
3,647,945 - -0.1
3,647,945 - +0.1
3,648,016 + +0.6
3,648,017 - +0.3
3,648,017 - -0.7
3,648,017 - -0.3
3,648,311 + -0.6
3,648,488 - RR42_RS36510 0.18 -0.3
3,648,731 + RR42_RS36510 0.42 -0.2
3,648,732 - RR42_RS36510 0.42 +0.1
3,648,732 - RR42_RS36510 0.42 -1.1
3,648,783 - RR42_RS36510 0.48 +2.2
3,648,818 + RR42_RS36510 0.51 +0.2
3,648,818 + RR42_RS36510 0.51 -0.2
3,648,818 + RR42_RS36510 0.51 -0.3
3,648,819 - RR42_RS36510 0.51 -1.1
3,648,972 - RR42_RS36510 0.67 +0.2
3,649,005 + RR42_RS36510 0.70 +0.2
3,649,006 - RR42_RS36510 0.70 +0.4

Or see this region's nucleotide sequence