Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29460

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29450 and RR42_RS29455 are separated by 23 nucleotidesRR42_RS29455 and RR42_RS29460 are separated by 69 nucleotidesRR42_RS29460 and RR42_RS29465 are separated by 43 nucleotides RR42_RS29450: RR42_RS29450 - ABC transporter, at 1,962,176 to 1,962,973 _RS29450 RR42_RS29455: RR42_RS29455 - ABC transporter ATP-binding protein, at 1,962,997 to 1,963,782 _RS29455 RR42_RS29460: RR42_RS29460 - fatty-acid--CoA ligase, at 1,963,852 to 1,965,681 _RS29460 RR42_RS29465: RR42_RS29465 - enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase, at 1,965,725 to 1,968,010 _RS29465 Position (kb) 1963 1964 1965 1966Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1962.926 kb on + strandat 1962.948 kb on + strandat 1962.948 kb on + strandat 1962.948 kb on + strandat 1962.949 kb on - strandat 1962.949 kb on - strandat 1962.949 kb on - strandat 1963.051 kb on + strandat 1963.052 kb on - strandat 1963.052 kb on - strandat 1963.324 kb on + strand, within RR42_RS29455at 1963.324 kb on + strand, within RR42_RS29455at 1963.325 kb on - strand, within RR42_RS29455at 1963.373 kb on - strand, within RR42_RS29455at 1963.608 kb on + strand, within RR42_RS29455at 1963.608 kb on + strand, within RR42_RS29455at 1963.609 kb on - strand, within RR42_RS29455at 1963.630 kb on + strand, within RR42_RS29455at 1963.630 kb on + strand, within RR42_RS29455at 1963.631 kb on - strand, within RR42_RS29455at 1963.631 kb on - strand, within RR42_RS29455at 1963.636 kb on + strand, within RR42_RS29455at 1963.637 kb on - strand, within RR42_RS29455at 1963.637 kb on - strand, within RR42_RS29455at 1963.714 kb on + strandat 1963.714 kb on + strandat 1963.714 kb on + strandat 1963.714 kb on + strandat 1963.969 kb on + strandat 1963.969 kb on + strandat 1963.969 kb on + strandat 1964.134 kb on + strand, within RR42_RS29460at 1964.135 kb on - strand, within RR42_RS29460at 1964.135 kb on - strand, within RR42_RS29460at 1964.164 kb on + strand, within RR42_RS29460at 1964.164 kb on + strand, within RR42_RS29460at 1964.164 kb on + strand, within RR42_RS29460at 1964.164 kb on + strand, within RR42_RS29460at 1964.165 kb on - strand, within RR42_RS29460at 1964.165 kb on - strand, within RR42_RS29460at 1964.227 kb on + strand, within RR42_RS29460at 1964.228 kb on - strand, within RR42_RS29460at 1964.228 kb on - strand, within RR42_RS29460at 1964.428 kb on + strand, within RR42_RS29460at 1964.428 kb on + strand, within RR42_RS29460at 1964.430 kb on + strand, within RR42_RS29460at 1964.430 kb on + strand, within RR42_RS29460at 1964.430 kb on + strand, within RR42_RS29460at 1964.431 kb on - strand, within RR42_RS29460at 1964.590 kb on + strand, within RR42_RS29460at 1964.590 kb on + strand, within RR42_RS29460at 1964.591 kb on - strand, within RR42_RS29460at 1964.591 kb on - strand, within RR42_RS29460at 1964.593 kb on + strand, within RR42_RS29460at 1964.713 kb on + strand, within RR42_RS29460at 1964.713 kb on + strand, within RR42_RS29460at 1964.714 kb on - strand, within RR42_RS29460at 1964.965 kb on + strand, within RR42_RS29460at 1964.965 kb on + strand, within RR42_RS29460at 1964.966 kb on - strand, within RR42_RS29460at 1964.966 kb on - strand, within RR42_RS29460at 1964.966 kb on - strand, within RR42_RS29460at 1964.966 kb on - strand, within RR42_RS29460at 1964.966 kb on - strand, within RR42_RS29460at 1964.968 kb on - strand, within RR42_RS29460at 1964.968 kb on - strand, within RR42_RS29460at 1965.027 kb on + strand, within RR42_RS29460at 1965.085 kb on - strand, within RR42_RS29460at 1965.148 kb on + strand, within RR42_RS29460at 1965.236 kb on - strand, within RR42_RS29460at 1965.236 kb on - strand, within RR42_RS29460at 1965.239 kb on + strand, within RR42_RS29460at 1965.241 kb on + strand, within RR42_RS29460at 1965.241 kb on + strand, within RR42_RS29460at 1965.241 kb on + strand, within RR42_RS29460at 1965.241 kb on + strand, within RR42_RS29460at 1965.241 kb on + strand, within RR42_RS29460at 1965.241 kb on + strand, within RR42_RS29460at 1965.242 kb on - strand, within RR42_RS29460at 1965.242 kb on - strand, within RR42_RS29460at 1965.242 kb on - strand, within RR42_RS29460at 1965.242 kb on - strand, within RR42_RS29460at 1965.242 kb on - strand, within RR42_RS29460at 1965.242 kb on - strand, within RR42_RS29460at 1965.242 kb on - strand, within RR42_RS29460at 1965.244 kb on - strand, within RR42_RS29460at 1965.334 kb on + strand, within RR42_RS29460at 1965.334 kb on + strand, within RR42_RS29460at 1965.334 kb on + strand, within RR42_RS29460at 1965.334 kb on + strand, within RR42_RS29460at 1965.335 kb on - strand, within RR42_RS29460at 1965.335 kb on - strand, within RR42_RS29460at 1965.335 kb on - strand, within RR42_RS29460at 1965.335 kb on - strand, within RR42_RS29460at 1965.373 kb on + strand, within RR42_RS29460at 1965.451 kb on + strand, within RR42_RS29460at 1965.452 kb on - strand, within RR42_RS29460at 1965.452 kb on - strand, within RR42_RS29460at 1965.637 kb on + strandat 1965.638 kb on - strandat 1965.638 kb on - strandat 1965.661 kb on + strandat 1965.662 kb on - strandat 1965.662 kb on - strandat 1965.971 kb on + strand, within RR42_RS29465at 1965.971 kb on + strand, within RR42_RS29465at 1965.972 kb on - strand, within RR42_RS29465at 1965.972 kb on - strand, within RR42_RS29465at 1965.979 kb on + strand, within RR42_RS29465at 1966.424 kb on + strand, within RR42_RS29465at 1966.628 kb on - strand, within RR42_RS29465

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,962,926 + +0.6
1,962,948 + -0.4
1,962,948 + +0.7
1,962,948 + +0.3
1,962,949 - -1.5
1,962,949 - -0.6
1,962,949 - +0.7
1,963,051 + +0.4
1,963,052 - +1.2
1,963,052 - +0.4
1,963,324 + RR42_RS29455 0.42 -0.2
1,963,324 + RR42_RS29455 0.42 -1.6
1,963,325 - RR42_RS29455 0.42 +0.0
1,963,373 - RR42_RS29455 0.48 +0.3
1,963,608 + RR42_RS29455 0.78 -0.4
1,963,608 + RR42_RS29455 0.78 -0.3
1,963,609 - RR42_RS29455 0.78 -0.5
1,963,630 + RR42_RS29455 0.81 -1.6
1,963,630 + RR42_RS29455 0.81 +0.1
1,963,631 - RR42_RS29455 0.81 -1.3
1,963,631 - RR42_RS29455 0.81 +0.0
1,963,636 + RR42_RS29455 0.81 +0.1
1,963,637 - RR42_RS29455 0.81 -0.3
1,963,637 - RR42_RS29455 0.81 +0.6
1,963,714 + +0.5
1,963,714 + +0.4
1,963,714 + +1.0
1,963,714 + +0.2
1,963,969 + +0.6
1,963,969 + -0.0
1,963,969 + +0.1
1,964,134 + RR42_RS29460 0.15 +1.9
1,964,135 - RR42_RS29460 0.15 -1.4
1,964,135 - RR42_RS29460 0.15 +0.3
1,964,164 + RR42_RS29460 0.17 +0.3
1,964,164 + RR42_RS29460 0.17 +1.3
1,964,164 + RR42_RS29460 0.17 -1.2
1,964,164 + RR42_RS29460 0.17 -0.5
1,964,165 - RR42_RS29460 0.17 -0.1
1,964,165 - RR42_RS29460 0.17 -1.7
1,964,227 + RR42_RS29460 0.20 -1.5
1,964,228 - RR42_RS29460 0.21 -0.8
1,964,228 - RR42_RS29460 0.21 +0.3
1,964,428 + RR42_RS29460 0.31 +0.6
1,964,428 + RR42_RS29460 0.31 -0.3
1,964,430 + RR42_RS29460 0.32 -1.4
1,964,430 + RR42_RS29460 0.32 +1.3
1,964,430 + RR42_RS29460 0.32 +0.9
1,964,431 - RR42_RS29460 0.32 +0.2
1,964,590 + RR42_RS29460 0.40 -0.4
1,964,590 + RR42_RS29460 0.40 -0.3
1,964,591 - RR42_RS29460 0.40 +0.6
1,964,591 - RR42_RS29460 0.40 +0.9
1,964,593 + RR42_RS29460 0.40 +0.3
1,964,713 + RR42_RS29460 0.47 +2.8
1,964,713 + RR42_RS29460 0.47 -1.8
1,964,714 - RR42_RS29460 0.47 -0.1
1,964,965 + RR42_RS29460 0.61 +0.0
1,964,965 + RR42_RS29460 0.61 +0.5
1,964,966 - RR42_RS29460 0.61 +0.6
1,964,966 - RR42_RS29460 0.61 +1.9
1,964,966 - RR42_RS29460 0.61 +0.4
1,964,966 - RR42_RS29460 0.61 -0.6
1,964,966 - RR42_RS29460 0.61 +0.2
1,964,968 - RR42_RS29460 0.61 -1.0
1,964,968 - RR42_RS29460 0.61 +0.8
1,965,027 + RR42_RS29460 0.64 -0.8
1,965,085 - RR42_RS29460 0.67 +0.2
1,965,148 + RR42_RS29460 0.71 -1.2
1,965,236 - RR42_RS29460 0.76 -0.0
1,965,236 - RR42_RS29460 0.76 +0.3
1,965,239 + RR42_RS29460 0.76 +0.5
1,965,241 + RR42_RS29460 0.76 +0.2
1,965,241 + RR42_RS29460 0.76 +0.8
1,965,241 + RR42_RS29460 0.76 +0.3
1,965,241 + RR42_RS29460 0.76 -0.6
1,965,241 + RR42_RS29460 0.76 -0.1
1,965,241 + RR42_RS29460 0.76 +0.2
1,965,242 - RR42_RS29460 0.76 +0.2
1,965,242 - RR42_RS29460 0.76 -0.7
1,965,242 - RR42_RS29460 0.76 +0.2
1,965,242 - RR42_RS29460 0.76 +0.1
1,965,242 - RR42_RS29460 0.76 +0.6
1,965,242 - RR42_RS29460 0.76 +0.8
1,965,242 - RR42_RS29460 0.76 +1.2
1,965,244 - RR42_RS29460 0.76 -0.0
1,965,334 + RR42_RS29460 0.81 -0.4
1,965,334 + RR42_RS29460 0.81 +2.5
1,965,334 + RR42_RS29460 0.81 -0.6
1,965,334 + RR42_RS29460 0.81 +0.0
1,965,335 - RR42_RS29460 0.81 +0.1
1,965,335 - RR42_RS29460 0.81 +0.3
1,965,335 - RR42_RS29460 0.81 +1.0
1,965,335 - RR42_RS29460 0.81 -1.4
1,965,373 + RR42_RS29460 0.83 +0.7
1,965,451 + RR42_RS29460 0.87 -0.5
1,965,452 - RR42_RS29460 0.87 +0.3
1,965,452 - RR42_RS29460 0.87 -0.6
1,965,637 + +0.3
1,965,638 - -2.3
1,965,638 - +0.6
1,965,661 + -0.3
1,965,662 - +0.7
1,965,662 - -1.2
1,965,971 + RR42_RS29465 0.11 +0.5
1,965,971 + RR42_RS29465 0.11 -0.1
1,965,972 - RR42_RS29465 0.11 +0.1
1,965,972 - RR42_RS29465 0.11 -0.6
1,965,979 + RR42_RS29465 0.11 -0.4
1,966,424 + RR42_RS29465 0.31 -0.7
1,966,628 - RR42_RS29465 0.40 +0.3

Or see this region's nucleotide sequence