Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24845

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24840 and RR42_RS24845 are separated by 51 nucleotidesRR42_RS24845 and RR42_RS24850 overlap by 1 nucleotidesRR42_RS24850 and RR42_RS24855 are separated by 32 nucleotides RR42_RS24840: RR42_RS24840 - aldehyde dehydrogenase, at 910,456 to 911,916 _RS24840 RR42_RS24845: RR42_RS24845 - iditol 2-dehydrogenase, at 911,968 to 913,023 _RS24845 RR42_RS24850: RR42_RS24850 - alpha/beta hydrolase, at 913,023 to 913,943 _RS24850 RR42_RS24855: RR42_RS24855 - MFS transporter, at 913,976 to 915,304 _RS24855 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -2 -1 0 1at 911.105 kb on + strand, within RR42_RS24840at 911.412 kb on - strand, within RR42_RS24840at 911.475 kb on - strand, within RR42_RS24840at 911.483 kb on + strand, within RR42_RS24840at 911.549 kb on + strand, within RR42_RS24840at 911.845 kb on - strandat 911.873 kb on + strandat 912.055 kb on - strandat 912.241 kb on + strand, within RR42_RS24845at 912.729 kb on - strand, within RR42_RS24845at 912.896 kb on + strand, within RR42_RS24845at 912.896 kb on + strand, within RR42_RS24845at 913.091 kb on - strandat 913.100 kb on - strandat 913.355 kb on - strand, within RR42_RS24850at 913.525 kb on + strand, within RR42_RS24850at 913.526 kb on - strand, within RR42_RS24850at 913.526 kb on - strand, within RR42_RS24850at 913.692 kb on + strand, within RR42_RS24850at 913.712 kb on - strand, within RR42_RS24850at 913.858 kb on + strandat 913.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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911,105 + RR42_RS24840 0.44 +0.8
911,412 - RR42_RS24840 0.65 +0.1
911,475 - RR42_RS24840 0.70 -0.0
911,483 + RR42_RS24840 0.70 +0.0
911,549 + RR42_RS24840 0.75 +0.9
911,845 - -0.6
911,873 + -0.6
912,055 - -1.3
912,241 + RR42_RS24845 0.26 -0.4
912,729 - RR42_RS24845 0.72 -1.9
912,896 + RR42_RS24845 0.88 -0.5
912,896 + RR42_RS24845 0.88 -0.7
913,091 - +1.3
913,100 - +1.3
913,355 - RR42_RS24850 0.36 -0.3
913,525 + RR42_RS24850 0.55 -0.5
913,526 - RR42_RS24850 0.55 +0.1
913,526 - RR42_RS24850 0.55 +0.3
913,692 + RR42_RS24850 0.73 +1.1
913,712 - RR42_RS24850 0.75 +0.5
913,858 + +0.5
913,993 - +0.1

Or see this region's nucleotide sequence