Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08145 and RR42_RS08150 are separated by 833 nucleotides RR42_RS08150 and RR42_RS08155 are separated by 73 nucleotides RR42_RS08155 and RR42_RS08160 are separated by 76 nucleotides RR42_RS08160 and RR42_RS08165 are separated by 127 nucleotides
RR42_RS08145: RR42_RS08145 - hypothetical protein, at 1,737,189 to 1,737,401
_RS08145
RR42_RS08150: RR42_RS08150 - hypothetical protein, at 1,738,235 to 1,738,459
_RS08150
RR42_RS08155: RR42_RS08155 - hypothetical protein, at 1,738,533 to 1,738,832
_RS08155
RR42_RS08160: RR42_RS08160 - hypothetical protein, at 1,738,909 to 1,739,103
_RS08160
RR42_RS08165: RR42_RS08165 - hypothetical protein, at 1,739,231 to 1,739,686
_RS08165
Position (kb)
1738
1739 Strain fitness (log2 ratio)
-1
0
1 at 1737.274 kb on - strand, within RR42_RS08145 at 1737.539 kb on - strand at 1737.568 kb on - strand at 1737.713 kb on - strand at 1737.713 kb on - strand at 1737.775 kb on - strand at 1737.928 kb on - strand at 1738.806 kb on - strand at 1738.806 kb on - strand at 1738.823 kb on - strand at 1738.823 kb on - strand at 1738.823 kb on - strand at 1739.012 kb on - strand, within RR42_RS08160 at 1739.197 kb on - strand at 1739.243 kb on - strand at 1739.243 kb on - strand at 1739.243 kb on - strand at 1739.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 1,737,274 - RR42_RS08145 0.40 +1.1 1,737,539 - +0.4 1,737,568 - -0.5 1,737,713 - -1.1 1,737,713 - +0.6 1,737,775 - -0.4 1,737,928 - -0.6 1,738,806 - +0.5 1,738,806 - -1.2 1,738,823 - -0.7 1,738,823 - -0.9 1,738,823 - -0.1 1,739,012 - RR42_RS08160 0.53 +0.8 1,739,197 - -0.4 1,739,243 - +0.2 1,739,243 - -0.4 1,739,243 - -1.0 1,739,243 - -0.3
Or see this region's nucleotide sequence