Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03765 and RR42_RS03770 overlap by 4 nucleotides RR42_RS03770 and RR42_RS03775 are separated by 83 nucleotides RR42_RS03775 and RR42_RS03780 are separated by 53 nucleotides
RR42_RS03765: RR42_RS03765 - formate dehydrogenase, at 832,321 to 833,160
_RS03765
RR42_RS03770: RR42_RS03770 - formate dehydrogenase, at 833,157 to 833,381
_RS03770
RR42_RS03775: RR42_RS03775 - transglycosylase, at 833,465 to 834,160
_RS03775
RR42_RS03780: RR42_RS03780 - lactate dehydrogenase, at 834,214 to 835,263
_RS03780
Position (kb) 833
834
835 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.559 kb on - strand, within RR42_RS03765 at 832.762 kb on + strand, within RR42_RS03765 at 832.975 kb on + strand, within RR42_RS03765 at 833.051 kb on + strand, within RR42_RS03765 at 833.116 kb on + strand at 833.116 kb on + strand at 833.256 kb on - strand, within RR42_RS03770 at 833.466 kb on + strand at 833.503 kb on - strand at 833.548 kb on + strand, within RR42_RS03775 at 833.549 kb on - strand, within RR42_RS03775 at 833.549 kb on - strand, within RR42_RS03775 at 833.550 kb on + strand, within RR42_RS03775 at 833.550 kb on + strand, within RR42_RS03775 at 833.550 kb on + strand, within RR42_RS03775 at 833.551 kb on - strand, within RR42_RS03775 at 833.551 kb on - strand, within RR42_RS03775 at 833.674 kb on - strand, within RR42_RS03775 at 833.719 kb on - strand, within RR42_RS03775 at 833.719 kb on - strand, within RR42_RS03775 at 833.733 kb on + strand, within RR42_RS03775 at 833.733 kb on + strand, within RR42_RS03775 at 833.733 kb on + strand, within RR42_RS03775 at 833.796 kb on + strand, within RR42_RS03775 at 833.796 kb on + strand, within RR42_RS03775 at 833.797 kb on - strand, within RR42_RS03775 at 833.811 kb on + strand, within RR42_RS03775 at 833.812 kb on - strand, within RR42_RS03775 at 833.812 kb on - strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.925 kb on + strand, within RR42_RS03775 at 833.947 kb on - strand, within RR42_RS03775 at 833.947 kb on - strand, within RR42_RS03775 at 834.015 kb on + strand, within RR42_RS03775 at 834.015 kb on + strand, within RR42_RS03775 at 834.167 kb on + strand at 834.383 kb on + strand, within RR42_RS03780 at 834.384 kb on - strand, within RR42_RS03780 at 834.384 kb on - strand, within RR42_RS03780 at 834.462 kb on + strand, within RR42_RS03780 at 834.462 kb on + strand, within RR42_RS03780 at 834.462 kb on + strand, within RR42_RS03780 at 834.463 kb on - strand, within RR42_RS03780 at 834.852 kb on + strand, within RR42_RS03780 at 834.852 kb on + strand, within RR42_RS03780 at 834.853 kb on - strand, within RR42_RS03780 at 835.109 kb on + strand, within RR42_RS03780 at 835.110 kb on - strand, within RR42_RS03780 at 835.110 kb on - strand, within RR42_RS03780 at 835.143 kb on - strand, within RR42_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 832,559 - RR42_RS03765 0.28 +0.8 832,762 + RR42_RS03765 0.53 +0.8 832,975 + RR42_RS03765 0.78 -0.6 833,051 + RR42_RS03765 0.87 +0.0 833,116 + +0.0 833,116 + +0.8 833,256 - RR42_RS03770 0.44 -1.0 833,466 + -0.2 833,503 - -0.7 833,548 + RR42_RS03775 0.12 +1.5 833,549 - RR42_RS03775 0.12 -0.7 833,549 - RR42_RS03775 0.12 +0.4 833,550 + RR42_RS03775 0.12 +1.4 833,550 + RR42_RS03775 0.12 -0.2 833,550 + RR42_RS03775 0.12 +0.5 833,551 - RR42_RS03775 0.12 +0.3 833,551 - RR42_RS03775 0.12 -0.3 833,674 - RR42_RS03775 0.30 +0.0 833,719 - RR42_RS03775 0.36 +0.3 833,719 - RR42_RS03775 0.36 +0.0 833,733 + RR42_RS03775 0.39 +0.6 833,733 + RR42_RS03775 0.39 +0.1 833,733 + RR42_RS03775 0.39 +0.4 833,796 + RR42_RS03775 0.48 +1.1 833,796 + RR42_RS03775 0.48 -0.2 833,797 - RR42_RS03775 0.48 +0.1 833,811 + RR42_RS03775 0.50 +0.2 833,812 - RR42_RS03775 0.50 -0.7 833,812 - RR42_RS03775 0.50 +0.4 833,925 + RR42_RS03775 0.66 +0.9 833,925 + RR42_RS03775 0.66 +0.7 833,925 + RR42_RS03775 0.66 +0.5 833,925 + RR42_RS03775 0.66 +0.7 833,947 - RR42_RS03775 0.69 -0.6 833,947 - RR42_RS03775 0.69 +0.0 834,015 + RR42_RS03775 0.79 +1.0 834,015 + RR42_RS03775 0.79 +0.1 834,167 + -1.3 834,383 + RR42_RS03780 0.16 -1.2 834,384 - RR42_RS03780 0.16 -1.2 834,384 - RR42_RS03780 0.16 -1.9 834,462 + RR42_RS03780 0.24 +1.4 834,462 + RR42_RS03780 0.24 +0.3 834,462 + RR42_RS03780 0.24 -0.8 834,463 - RR42_RS03780 0.24 +0.9 834,852 + RR42_RS03780 0.61 +0.4 834,852 + RR42_RS03780 0.61 +0.1 834,853 - RR42_RS03780 0.61 +2.1 835,109 + RR42_RS03780 0.85 -0.1 835,110 - RR42_RS03780 0.85 +0.2 835,110 - RR42_RS03780 0.85 -0.5 835,143 - RR42_RS03780 0.88 +0.3
Or see this region's nucleotide sequence