Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05256

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05254 and H281DRAFT_05256 are separated by 176 nucleotides H281DRAFT_05254: H281DRAFT_05254 - Lysophospholipase, at 223,082 to 224,998 _05254 H281DRAFT_05256: H281DRAFT_05256 - threonine ammonia-lyase, biosynthetic, long form, at 225,175 to 226,197 _05256 Position (kb) 225 226 227Strain fitness (log2 ratio) -1 0 1at 224.366 kb on + strand, within H281DRAFT_05254at 224.366 kb on + strand, within H281DRAFT_05254at 224.366 kb on + strand, within H281DRAFT_05254at 224.366 kb on + strand, within H281DRAFT_05254at 224.366 kb on + strand, within H281DRAFT_05254at 224.367 kb on - strand, within H281DRAFT_05254at 224.367 kb on - strand, within H281DRAFT_05254at 224.718 kb on - strand, within H281DRAFT_05254at 225.092 kb on + strandat 225.093 kb on - strandat 225.095 kb on + strandat 225.096 kb on - strandat 225.672 kb on + strand, within H281DRAFT_05256

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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224,366 + H281DRAFT_05254 0.67 +0.8
224,366 + H281DRAFT_05254 0.67 +0.0
224,366 + H281DRAFT_05254 0.67 -0.8
224,366 + H281DRAFT_05254 0.67 +0.1
224,366 + H281DRAFT_05254 0.67 -1.3
224,367 - H281DRAFT_05254 0.67 -0.3
224,367 - H281DRAFT_05254 0.67 -0.5
224,718 - H281DRAFT_05254 0.85 -0.4
225,092 + -0.6
225,093 - -0.5
225,095 + -0.0
225,096 - -0.8
225,672 + H281DRAFT_05256 0.49 -0.2

Or see this region's nucleotide sequence