Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04860

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04860 and H281DRAFT_04861 are separated by 105 nucleotides H281DRAFT_04860: H281DRAFT_04860 - glucose-1-phosphate adenylyltransferase, at 109 to 1,374 _04860 H281DRAFT_04861: H281DRAFT_04861 - starch synthase, at 1,480 to 2,940 _04861 Position (kb) 0 1 2Strain fitness (log2 ratio) -1 0 1at 0.237 kb on + strand, within H281DRAFT_04860at 0.242 kb on - strand, within H281DRAFT_04860at 0.313 kb on + strand, within H281DRAFT_04860at 0.314 kb on - strand, within H281DRAFT_04860at 0.314 kb on - strand, within H281DRAFT_04860at 0.493 kb on + strand, within H281DRAFT_04860at 0.493 kb on + strand, within H281DRAFT_04860at 0.523 kb on + strand, within H281DRAFT_04860at 0.523 kb on + strand, within H281DRAFT_04860at 0.536 kb on - strand, within H281DRAFT_04860at 0.696 kb on - strand, within H281DRAFT_04860at 0.736 kb on + strand, within H281DRAFT_04860at 0.737 kb on - strand, within H281DRAFT_04860at 0.737 kb on - strand, within H281DRAFT_04860at 0.737 kb on - strand, within H281DRAFT_04860at 0.737 kb on - strand, within H281DRAFT_04860at 0.754 kb on + strand, within H281DRAFT_04860at 0.761 kb on - strand, within H281DRAFT_04860at 0.882 kb on - strand, within H281DRAFT_04860at 0.937 kb on + strand, within H281DRAFT_04860at 0.988 kb on + strand, within H281DRAFT_04860at 0.988 kb on + strand, within H281DRAFT_04860at 0.989 kb on - strand, within H281DRAFT_04860at 1.015 kb on + strand, within H281DRAFT_04860at 1.015 kb on + strand, within H281DRAFT_04860at 1.405 kb on - strandat 1.436 kb on + strandat 1.517 kb on - strandat 1.736 kb on - strand, within H281DRAFT_04861at 1.760 kb on - strand, within H281DRAFT_04861at 2.072 kb on - strand, within H281DRAFT_04861at 2.155 kb on + strand, within H281DRAFT_04861at 2.208 kb on - strandat 2.254 kb on + strand, within H281DRAFT_04861at 2.255 kb on - strand, within H281DRAFT_04861at 2.256 kb on + strand, within H281DRAFT_04861

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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237 + H281DRAFT_04860 0.10 +0.3
242 - H281DRAFT_04860 0.11 +0.3
313 + H281DRAFT_04860 0.16 +0.3
314 - H281DRAFT_04860 0.16 +0.6
314 - H281DRAFT_04860 0.16 -0.4
493 + H281DRAFT_04860 0.30 +0.4
493 + H281DRAFT_04860 0.30 +0.9
523 + H281DRAFT_04860 0.33 +0.1
523 + H281DRAFT_04860 0.33 +0.3
536 - H281DRAFT_04860 0.34 +0.3
696 - H281DRAFT_04860 0.46 +0.2
736 + H281DRAFT_04860 0.50 -0.6
737 - H281DRAFT_04860 0.50 -0.0
737 - H281DRAFT_04860 0.50 -0.4
737 - H281DRAFT_04860 0.50 +0.3
737 - H281DRAFT_04860 0.50 +0.4
754 + H281DRAFT_04860 0.51 +0.0
761 - H281DRAFT_04860 0.52 -0.2
882 - H281DRAFT_04860 0.61 +1.0
937 + H281DRAFT_04860 0.65 +0.3
988 + H281DRAFT_04860 0.69 -0.0
988 + H281DRAFT_04860 0.69 +0.1
989 - H281DRAFT_04860 0.70 +0.2
1,015 + H281DRAFT_04860 0.72 +0.1
1,015 + H281DRAFT_04860 0.72 -0.1
1,405 - -0.9
1,436 + +0.0
1,517 - -1.7
1,736 - H281DRAFT_04861 0.18 +0.4
1,760 - H281DRAFT_04861 0.19 +0.2
2,072 - H281DRAFT_04861 0.41 +1.2
2,155 + H281DRAFT_04861 0.46 -0.1
2,208 - -1.4
2,254 + H281DRAFT_04861 0.53 +0.3
2,255 - H281DRAFT_04861 0.53 +0.0
2,256 + H281DRAFT_04861 0.53 +0.4

Or see this region's nucleotide sequence