Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26810 and BWI76_RS26815 are separated by 83 nucleotides BWI76_RS26815 and BWI76_RS26820 are separated by 351 nucleotides BWI76_RS26820 and BWI76_RS26825 overlap by 20 nucleotides BWI76_RS26825 and BWI76_RS26830 are separated by 48 nucleotides
BWI76_RS26810: BWI76_RS26810 - cellulose biosynthesis protein BcsG, at 5,558,766 to 5,560,442
_RS26810
BWI76_RS26815: BWI76_RS26815 - small toxic polypeptide ldrD (Modular protein), at 5,560,526 to 5,560,651
_RS26815
BWI76_RS26820: BWI76_RS26820 - small toxic polypeptide ldrD (Modular protein), at 5,561,003 to 5,561,128
_RS26820
BWI76_RS26825: BWI76_RS26825 - hypothetical protein, at 5,561,109 to 5,561,327
_RS26825
BWI76_RS26830: BWI76_RS26830 - endoglucanase, at 5,561,376 to 5,562,380
_RS26830
Position (kb) 5561
5562 Strain fitness (log2 ratio) -2
-1
0
1 at 5560.369 kb on - strand at 5560.399 kb on + strand at 5560.492 kb on - strand at 5560.729 kb on - strand at 5560.964 kb on - strand at 5561.144 kb on + strand, within BWI76_RS26825 at 5561.342 kb on + strand at 5561.398 kb on + strand at 5561.477 kb on + strand, within BWI76_RS26830 at 5561.477 kb on + strand, within BWI76_RS26830 at 5561.544 kb on - strand, within BWI76_RS26830 at 5561.772 kb on + strand, within BWI76_RS26830 at 5561.829 kb on + strand, within BWI76_RS26830 at 5561.860 kb on + strand, within BWI76_RS26830 at 5561.868 kb on - strand, within BWI76_RS26830 at 5561.876 kb on - strand, within BWI76_RS26830 at 5562.152 kb on + strand, within BWI76_RS26830 at 5562.160 kb on - strand, within BWI76_RS26830 at 5562.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 5,560,369 - +1.0 5,560,399 + -0.2 5,560,492 - -1.1 5,560,729 - +0.4 5,560,964 - +1.4 5,561,144 + BWI76_RS26825 0.16 -0.3 5,561,342 + +0.4 5,561,398 + -1.2 5,561,477 + BWI76_RS26830 0.10 +0.6 5,561,477 + BWI76_RS26830 0.10 +1.7 5,561,544 - BWI76_RS26830 0.17 +0.5 5,561,772 + BWI76_RS26830 0.39 -2.1 5,561,829 + BWI76_RS26830 0.45 -0.3 5,561,860 + BWI76_RS26830 0.48 -0.5 5,561,868 - BWI76_RS26830 0.49 +0.3 5,561,876 - BWI76_RS26830 0.50 -0.1 5,562,152 + BWI76_RS26830 0.77 +0.9 5,562,160 - BWI76_RS26830 0.78 -0.5 5,562,324 - +0.3
Or see this region's nucleotide sequence