Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26405 and BWI76_RS26410 overlap by 11 nucleotides BWI76_RS26410 and BWI76_RS26415 are separated by 14 nucleotides BWI76_RS26415 and BWI76_RS26420 are separated by 142 nucleotides BWI76_RS26420 and BWI76_RS26425 are separated by 78 nucleotides
BWI76_RS26405: BWI76_RS26405 - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 5,466,746 to 5,467,342
_RS26405
BWI76_RS26410: BWI76_RS26410 - membrane protein, at 5,467,332 to 5,467,610
_RS26410
BWI76_RS26415: BWI76_RS26415 - hypothetical protein, at 5,467,625 to 5,467,984
_RS26415
BWI76_RS26420: BWI76_RS26420 - lysoplasmalogenase, at 5,468,127 to 5,468,753
_RS26420
BWI76_RS26425: BWI76_RS26425 - zinc/cadmium/mercury/lead-transporting ATPase, at 5,468,832 to 5,471,036
_RS26425
Position (kb) 5467
5468 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5466.676 kb on + strand at 5466.953 kb on - strand, within BWI76_RS26405 at 5467.051 kb on + strand, within BWI76_RS26405 at 5467.305 kb on + strand at 5467.437 kb on + strand, within BWI76_RS26410 at 5467.473 kb on - strand, within BWI76_RS26410 at 5467.659 kb on + strand at 5467.753 kb on + strand, within BWI76_RS26415 at 5468.015 kb on + strand at 5468.165 kb on + strand at 5468.165 kb on + strand at 5468.173 kb on - strand at 5468.173 kb on - strand at 5468.227 kb on + strand, within BWI76_RS26420 at 5468.325 kb on + strand, within BWI76_RS26420 at 5468.342 kb on - strand, within BWI76_RS26420 at 5468.354 kb on + strand, within BWI76_RS26420 at 5468.393 kb on - strand at 5468.398 kb on - strand, within BWI76_RS26420 at 5468.498 kb on + strand, within BWI76_RS26420 at 5468.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 5,466,676 + -0.3 5,466,953 - BWI76_RS26405 0.35 +0.1 5,467,051 + BWI76_RS26405 0.51 -1.2 5,467,305 + +0.4 5,467,437 + BWI76_RS26410 0.38 -2.1 5,467,473 - BWI76_RS26410 0.51 -0.3 5,467,659 + +0.4 5,467,753 + BWI76_RS26415 0.36 -2.7 5,468,015 + -0.5 5,468,165 + -1.0 5,468,165 + +0.5 5,468,173 - -0.4 5,468,173 - +0.4 5,468,227 + BWI76_RS26420 0.16 +2.8 5,468,325 + BWI76_RS26420 0.32 +0.0 5,468,342 - BWI76_RS26420 0.34 -0.6 5,468,354 + BWI76_RS26420 0.36 -0.7 5,468,393 - +1.2 5,468,398 - BWI76_RS26420 0.43 +0.6 5,468,498 + BWI76_RS26420 0.59 +0.7 5,468,713 - +0.4
Or see this region's nucleotide sequence