Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25640 and BWI76_RS25645 overlap by 4 nucleotides BWI76_RS25645 and BWI76_RS25650 are separated by 3 nucleotides BWI76_RS25650 and BWI76_RS25655 are separated by 4 nucleotides BWI76_RS25655 and BWI76_RS25660 are separated by 27 nucleotides
BWI76_RS25640: BWI76_RS25640 - hypothetical protein, at 5,326,390 to 5,326,647
_RS25640
BWI76_RS25645: BWI76_RS25645 - shikimate dehydrogenase, at 5,326,644 to 5,327,462
_RS25645
BWI76_RS25650: BWI76_RS25650 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 5,327,466 to 5,328,038
_RS25650
BWI76_RS25655: BWI76_RS25655 - DNA topoisomerase type IA zn finger domain-containing protein, at 5,328,043 to 5,328,585
_RS25655
BWI76_RS25660: BWI76_RS25660 - hypothetical protein, at 5,328,613 to 5,329,086
_RS25660
Position (kb) 5327
5328
5329 Strain fitness (log2 ratio) -2
-1
0
1 at 5326.491 kb on + strand, within BWI76_RS25640 at 5326.533 kb on + strand, within BWI76_RS25640 at 5326.548 kb on - strand, within BWI76_RS25640 at 5326.565 kb on - strand, within BWI76_RS25640 at 5326.670 kb on - strand at 5326.891 kb on + strand, within BWI76_RS25645 at 5326.940 kb on - strand, within BWI76_RS25645 at 5327.040 kb on - strand, within BWI76_RS25645 at 5327.065 kb on - strand, within BWI76_RS25645 at 5327.139 kb on + strand, within BWI76_RS25645 at 5327.147 kb on + strand, within BWI76_RS25645 at 5327.147 kb on + strand, within BWI76_RS25645 at 5327.147 kb on - strand, within BWI76_RS25645 at 5327.193 kb on - strand, within BWI76_RS25645 at 5327.217 kb on + strand, within BWI76_RS25645 at 5327.217 kb on + strand, within BWI76_RS25645 at 5327.225 kb on - strand, within BWI76_RS25645 at 5327.301 kb on - strand, within BWI76_RS25645 at 5327.362 kb on - strand, within BWI76_RS25645 at 5328.405 kb on - strand, within BWI76_RS25655 at 5328.414 kb on - strand, within BWI76_RS25655 at 5328.492 kb on - strand, within BWI76_RS25655 at 5328.520 kb on - strand, within BWI76_RS25655 at 5328.763 kb on + strand, within BWI76_RS25660 at 5328.866 kb on + strand, within BWI76_RS25660 at 5328.951 kb on + strand, within BWI76_RS25660 at 5329.015 kb on + strand, within BWI76_RS25660 at 5329.023 kb on - strand, within BWI76_RS25660
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 5,326,491 + BWI76_RS25640 0.39 +0.0 5,326,533 + BWI76_RS25640 0.55 -1.9 5,326,548 - BWI76_RS25640 0.61 -0.4 5,326,565 - BWI76_RS25640 0.68 -1.1 5,326,670 - +0.9 5,326,891 + BWI76_RS25645 0.30 -1.6 5,326,940 - BWI76_RS25645 0.36 -1.4 5,327,040 - BWI76_RS25645 0.48 +0.2 5,327,065 - BWI76_RS25645 0.51 -0.4 5,327,139 + BWI76_RS25645 0.60 -1.6 5,327,147 + BWI76_RS25645 0.61 -1.4 5,327,147 + BWI76_RS25645 0.61 +1.2 5,327,147 - BWI76_RS25645 0.61 +1.2 5,327,193 - BWI76_RS25645 0.67 -1.4 5,327,217 + BWI76_RS25645 0.70 -2.0 5,327,217 + BWI76_RS25645 0.70 -1.4 5,327,225 - BWI76_RS25645 0.71 -2.2 5,327,301 - BWI76_RS25645 0.80 -0.8 5,327,362 - BWI76_RS25645 0.88 -0.2 5,328,405 - BWI76_RS25655 0.67 +0.2 5,328,414 - BWI76_RS25655 0.68 -1.9 5,328,492 - BWI76_RS25655 0.83 +0.9 5,328,520 - BWI76_RS25655 0.88 -0.2 5,328,763 + BWI76_RS25660 0.32 +0.5 5,328,866 + BWI76_RS25660 0.53 -0.2 5,328,951 + BWI76_RS25660 0.71 +0.7 5,329,015 + BWI76_RS25660 0.85 +0.3 5,329,023 - BWI76_RS25660 0.86 -0.4
Or see this region's nucleotide sequence