Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25095 and BWI76_RS25100 are separated by 27 nucleotides BWI76_RS25100 and BWI76_RS25105 are separated by 206 nucleotides BWI76_RS25105 and BWI76_RS25110 are separated by 130 nucleotides BWI76_RS25110 and BWI76_RS25115 overlap by 21 nucleotides
BWI76_RS25095: BWI76_RS25095 - transcription termination protein NusA, at 5,225,395 to 5,226,882
_RS25095
BWI76_RS25100: BWI76_RS25100 - ribosome maturation factor, at 5,226,910 to 5,227,362
_RS25100
BWI76_RS25105: BWI76_RS25105 - tRNA-Met, at 5,227,569 to 5,227,645
_RS25105
BWI76_RS25110: BWI76_RS25110 - hypothetical protein, at 5,227,776 to 5,227,973
_RS25110
BWI76_RS25115: BWI76_RS25115 - argininosuccinate synthase, at 5,227,953 to 5,229,296
_RS25115
Position (kb)
5227
5228 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5228.036 kb on + strand at 5228.036 kb on + strand at 5228.054 kb on - strand at 5228.077 kb on + strand at 5228.228 kb on - strand, within BWI76_RS25115 at 5228.249 kb on + strand, within BWI76_RS25115 at 5228.359 kb on + strand, within BWI76_RS25115 at 5228.390 kb on + strand, within BWI76_RS25115 at 5228.455 kb on + strand, within BWI76_RS25115 at 5228.585 kb on - strand, within BWI76_RS25115
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 5,228,036 + -3.2 5,228,036 + -1.2 5,228,054 - -1.8 5,228,077 + -2.8 5,228,228 - BWI76_RS25115 0.20 -1.1 5,228,249 + BWI76_RS25115 0.22 -2.6 5,228,359 + BWI76_RS25115 0.30 -1.9 5,228,390 + BWI76_RS25115 0.33 -1.7 5,228,455 + BWI76_RS25115 0.37 -1.0 5,228,585 - BWI76_RS25115 0.47 -1.2
Or see this region's nucleotide sequence