Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22170 and BWI76_RS22175 are separated by 130 nucleotides BWI76_RS22175 and BWI76_RS22180 are separated by 70 nucleotides BWI76_RS22180 and BWI76_RS22185 are separated by 80 nucleotides BWI76_RS22185 and BWI76_RS22190 are separated by 203 nucleotides
BWI76_RS22170: BWI76_RS22170 - alanine--tRNA ligase, at 4,622,705 to 4,625,332
_RS22170
BWI76_RS22175: BWI76_RS22175 - recombination regulator RecX, at 4,625,463 to 4,625,963
_RS22175
BWI76_RS22180: BWI76_RS22180 - recombinase RecA, at 4,626,034 to 4,627,092
_RS22180
BWI76_RS22185: BWI76_RS22185 - hypothetical protein, at 4,627,173 to 4,627,670
_RS22185
BWI76_RS22190: BWI76_RS22190 - hypothetical protein, at 4,627,874 to 4,628,066
_RS22190
Position (kb) 4626
4627
4628 Strain fitness (log2 ratio) -1
0
1 at 4625.512 kb on + strand at 4625.514 kb on - strand, within BWI76_RS22175 at 4625.936 kb on - strand at 4627.279 kb on - strand, within BWI76_RS22185 at 4627.346 kb on - strand, within BWI76_RS22185 at 4627.587 kb on - strand, within BWI76_RS22185 at 4627.894 kb on - strand, within BWI76_RS22190 at 4627.901 kb on - strand, within BWI76_RS22190 at 4627.949 kb on - strand, within BWI76_RS22190 at 4627.967 kb on - strand, within BWI76_RS22190 at 4628.001 kb on + strand, within BWI76_RS22190 at 4628.001 kb on + strand, within BWI76_RS22190 at 4628.002 kb on - strand, within BWI76_RS22190 at 4628.002 kb on - strand, within BWI76_RS22190 at 4628.002 kb on - strand, within BWI76_RS22190 at 4628.009 kb on - strand, within BWI76_RS22190
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 4,625,512 + -1.1 4,625,514 - BWI76_RS22175 0.10 +0.5 4,625,936 - +0.2 4,627,279 - BWI76_RS22185 0.21 -0.8 4,627,346 - BWI76_RS22185 0.35 +0.2 4,627,587 - BWI76_RS22185 0.83 +0.6 4,627,894 - BWI76_RS22190 0.10 -0.8 4,627,901 - BWI76_RS22190 0.14 +0.2 4,627,949 - BWI76_RS22190 0.39 +0.0 4,627,967 - BWI76_RS22190 0.48 -0.7 4,628,001 + BWI76_RS22190 0.66 +0.4 4,628,001 + BWI76_RS22190 0.66 -1.2 4,628,002 - BWI76_RS22190 0.66 +0.6 4,628,002 - BWI76_RS22190 0.66 +0.5 4,628,002 - BWI76_RS22190 0.66 +0.7 4,628,009 - BWI76_RS22190 0.70 -0.5
Or see this region's nucleotide sequence