Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19655 and BWI76_RS19660 are separated by 15 nucleotides BWI76_RS19660 and BWI76_RS19665 are separated by 242 nucleotides BWI76_RS19665 and BWI76_RS19670 overlap by 73 nucleotides BWI76_RS19670 and BWI76_RS19675 are separated by 53 nucleotides
BWI76_RS19655: BWI76_RS19655 - hypothetical protein, at 4,108,074 to 4,109,231
_RS19655
BWI76_RS19660: BWI76_RS19660 - GTP cyclohydrolase I FolE, at 4,109,247 to 4,109,915
_RS19660
BWI76_RS19665: BWI76_RS19665 - hypothetical protein, at 4,110,158 to 4,110,355
_RS19665
BWI76_RS19670: BWI76_RS19670 - S-formylglutathione hydrolase, at 4,110,283 to 4,111,119
_RS19670
BWI76_RS19675: BWI76_RS19675 - hypothetical protein, at 4,111,173 to 4,111,370
_RS19675
Position (kb) 4110
4111 Strain fitness (log2 ratio) -1
0
1
2 at 4109.236 kb on - strand at 4110.289 kb on - strand at 4110.568 kb on - strand, within BWI76_RS19670 at 4110.738 kb on + strand, within BWI76_RS19670 at 4111.299 kb on - strand, within BWI76_RS19675
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 4,109,236 - +0.3 4,110,289 - +1.8 4,110,568 - BWI76_RS19670 0.34 -0.1 4,110,738 + BWI76_RS19670 0.54 +1.7 4,111,299 - BWI76_RS19675 0.64 +1.2
Or see this region's nucleotide sequence