Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15855 and BWI76_RS15860 overlap by 4 nucleotides BWI76_RS15860 and BWI76_RS15865 overlap by 4 nucleotides BWI76_RS15865 and BWI76_RS15870 overlap by 4 nucleotides BWI76_RS15870 and BWI76_RS15875 are separated by 95 nucleotides BWI76_RS15875 and BWI76_RS15880 are separated by 26 nucleotides BWI76_RS15880 and BWI76_RS15885 are separated by 36 nucleotides
BWI76_RS15855: BWI76_RS15855 - hypothetical protein, at 3,293,231 to 3,293,458
_RS15855
BWI76_RS15860: BWI76_RS15860 - adenine-specific DNA methyltransferase, at 3,293,455 to 3,294,114
_RS15860
BWI76_RS15865: BWI76_RS15865 - hypothetical protein, at 3,294,111 to 3,294,332
_RS15865
BWI76_RS15870: BWI76_RS15870 - hypothetical protein, at 3,294,329 to 3,295,048
_RS15870
BWI76_RS15875: BWI76_RS15875 - hypothetical protein, at 3,295,144 to 3,295,383
_RS15875
BWI76_RS15880: BWI76_RS15880 - DNA-binding protein, at 3,295,410 to 3,295,679
_RS15880
BWI76_RS15885: BWI76_RS15885 - putative phage integrase, at 3,295,716 to 3,296,996
_RS15885
Position (kb) 3294
3295
3296 Strain fitness (log2 ratio) -1
0
1
2 at 3293.538 kb on + strand, within BWI76_RS15860 at 3293.610 kb on + strand, within BWI76_RS15860 at 3293.677 kb on - strand, within BWI76_RS15860 at 3293.694 kb on - strand, within BWI76_RS15860 at 3293.736 kb on + strand, within BWI76_RS15860 at 3293.814 kb on - strand, within BWI76_RS15860 at 3293.968 kb on - strand, within BWI76_RS15860 at 3294.160 kb on + strand, within BWI76_RS15865 at 3294.202 kb on - strand, within BWI76_RS15865 at 3294.202 kb on - strand, within BWI76_RS15865 at 3294.223 kb on + strand, within BWI76_RS15865 at 3295.027 kb on + strand at 3295.798 kb on - strand at 3295.912 kb on + strand, within BWI76_RS15885 at 3295.928 kb on + strand, within BWI76_RS15885 at 3295.949 kb on - strand, within BWI76_RS15885
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 3,293,538 + BWI76_RS15860 0.13 -0.5 3,293,610 + BWI76_RS15860 0.23 -1.3 3,293,677 - BWI76_RS15860 0.34 -0.3 3,293,694 - BWI76_RS15860 0.36 +0.1 3,293,736 + BWI76_RS15860 0.43 +0.6 3,293,814 - BWI76_RS15860 0.54 +2.0 3,293,968 - BWI76_RS15860 0.78 -0.4 3,294,160 + BWI76_RS15865 0.22 +0.7 3,294,202 - BWI76_RS15865 0.41 -0.2 3,294,202 - BWI76_RS15865 0.41 +0.1 3,294,223 + BWI76_RS15865 0.50 -0.6 3,295,027 + -1.3 3,295,798 - -0.2 3,295,912 + BWI76_RS15885 0.15 +0.3 3,295,928 + BWI76_RS15885 0.17 -0.4 3,295,949 - BWI76_RS15885 0.18 -0.5
Or see this region's nucleotide sequence