Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14785

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14780 and BWI76_RS14785 are separated by 435 nucleotidesBWI76_RS14785 and BWI76_RS14790 are separated by 36 nucleotides BWI76_RS14780: BWI76_RS14780 - phosphotriesterase, at 3,099,517 to 3,100,488 _RS14780 BWI76_RS14785: BWI76_RS14785 - hypothetical protein, at 3,100,924 to 3,101,172 _RS14785 BWI76_RS14790: BWI76_RS14790 - 2-dehydropantoate 2-reductase, at 3,101,209 to 3,102,102 _RS14790 Position (kb) 3100 3101 3102Strain fitness (log2 ratio) -1 0 1at 3100.077 kb on + strand, within BWI76_RS14780at 3100.176 kb on - strand, within BWI76_RS14780at 3100.627 kb on + strandat 3101.321 kb on - strandat 3101.463 kb on + strand, within BWI76_RS14790at 3101.607 kb on + strand, within BWI76_RS14790at 3102.083 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
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3,100,077 + BWI76_RS14780 0.58 -0.1
3,100,176 - BWI76_RS14780 0.68 -0.1
3,100,627 + +0.1
3,101,321 - +0.3
3,101,463 + BWI76_RS14790 0.28 +1.0
3,101,607 + BWI76_RS14790 0.45 -0.2
3,102,083 - +0.5

Or see this region's nucleotide sequence