Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12015

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12005 and BWI76_RS12010 are separated by 18 nucleotidesBWI76_RS12010 and BWI76_RS12015 are separated by 1 nucleotidesBWI76_RS12015 and BWI76_RS12020 overlap by 1 nucleotides BWI76_RS12005: BWI76_RS12005 - hypothetical protein, at 2,526,580 to 2,527,122 _RS12005 BWI76_RS12010: BWI76_RS12010 - antimicrobial peptide ABC system ATP-binding protein, at 2,527,141 to 2,527,950 _RS12010 BWI76_RS12015: BWI76_RS12015 - ABC transporter ATP-binding protein, at 2,527,952 to 2,528,944 _RS12015 BWI76_RS12020: BWI76_RS12020 - antimicrobial peptide ABC transporter permease SapC, at 2,528,944 to 2,529,834 _RS12020 Position (kb) 2527 2528 2529Strain fitness (log2 ratio) -1 0 1at 2527.479 kb on - strand, within BWI76_RS12010

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
remove
2,527,479 - BWI76_RS12010 0.42 -0.0

Or see this region's nucleotide sequence