Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10265 and BWI76_RS10270 overlap by 4 nucleotides BWI76_RS10270 and BWI76_RS10275 are separated by 13 nucleotides BWI76_RS10275 and BWI76_RS10280 overlap by 4 nucleotides
BWI76_RS10265: BWI76_RS10265 - mandelate racemase/muconate lactonizing protein, at 2,174,048 to 2,175,148
_RS10265
BWI76_RS10270: BWI76_RS10270 - acetylornithine deacetylase, at 2,175,145 to 2,176,320
_RS10270
BWI76_RS10275: BWI76_RS10275 - ABC transporter, at 2,176,334 to 2,177,074
_RS10275
BWI76_RS10280: BWI76_RS10280 - polar amino acid ABC transporter permease, at 2,177,071 to 2,177,796
_RS10280
Position (kb)
2175
2176
2177 Strain fitness (log2 ratio)
-1
0
1 at 2174.399 kb on + strand, within BWI76_RS10265 at 2174.485 kb on - strand, within BWI76_RS10265 at 2174.485 kb on - strand, within BWI76_RS10265 at 2174.799 kb on - strand, within BWI76_RS10265 at 2174.854 kb on - strand, within BWI76_RS10265 at 2174.904 kb on - strand, within BWI76_RS10265 at 2175.283 kb on - strand, within BWI76_RS10270 at 2175.320 kb on - strand, within BWI76_RS10270 at 2175.825 kb on - strand, within BWI76_RS10270 at 2176.089 kb on - strand, within BWI76_RS10270 at 2176.116 kb on - strand, within BWI76_RS10270 at 2176.353 kb on + strand at 2176.494 kb on - strand, within BWI76_RS10275 at 2176.517 kb on - strand, within BWI76_RS10275 at 2176.813 kb on + strand, within BWI76_RS10275 at 2176.990 kb on + strand, within BWI76_RS10275 at 2177.183 kb on + strand, within BWI76_RS10280 at 2177.191 kb on - strand, within BWI76_RS10280
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 2,174,399 + BWI76_RS10265 0.32 +0.5 2,174,485 - BWI76_RS10265 0.40 +1.2 2,174,485 - BWI76_RS10265 0.40 -0.3 2,174,799 - BWI76_RS10265 0.68 -0.0 2,174,854 - BWI76_RS10265 0.73 +1.2 2,174,904 - BWI76_RS10265 0.78 +0.2 2,175,283 - BWI76_RS10270 0.12 +0.5 2,175,320 - BWI76_RS10270 0.15 +0.2 2,175,825 - BWI76_RS10270 0.58 -0.8 2,176,089 - BWI76_RS10270 0.80 +0.3 2,176,116 - BWI76_RS10270 0.83 +0.1 2,176,353 + -1.5 2,176,494 - BWI76_RS10275 0.22 -0.7 2,176,517 - BWI76_RS10275 0.25 -0.2 2,176,813 + BWI76_RS10275 0.65 -1.1 2,176,990 + BWI76_RS10275 0.89 +0.1 2,177,183 + BWI76_RS10280 0.15 +0.8 2,177,191 - BWI76_RS10280 0.17 -1.2
Or see this region's nucleotide sequence