Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09940 and BWI76_RS09945 overlap by 1 nucleotides BWI76_RS09945 and BWI76_RS09950 are separated by 256 nucleotides BWI76_RS09950 and BWI76_RS09955 are separated by 65 nucleotides
BWI76_RS09940: BWI76_RS09940 - paraquat-inducible protein B, at 2,092,453 to 2,094,090
_RS09940
BWI76_RS09945: BWI76_RS09945 - lipoprotein, at 2,094,090 to 2,094,653
_RS09945
BWI76_RS09950: BWI76_RS09950 - ribosome modulation factor, at 2,094,910 to 2,095,077
_RS09950
BWI76_RS09955: BWI76_RS09955 - beta-hydroxydecanoyl-ACP dehydratase, at 2,095,143 to 2,095,661
_RS09955
Position (kb)
2094
2095 Strain fitness (log2 ratio)
-2
-1
0
1 at 2093.546 kb on + strand, within BWI76_RS09940 at 2094.080 kb on - strand at 2094.589 kb on + strand, within BWI76_RS09945 at 2094.599 kb on + strand at 2094.599 kb on + strand at 2094.607 kb on - strand at 2095.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 2,093,546 + BWI76_RS09940 0.67 +0.2 2,094,080 - -0.0 2,094,589 + BWI76_RS09945 0.88 +0.0 2,094,599 + +0.6 2,094,599 + +0.1 2,094,607 - -2.0 2,095,070 - +0.1
Or see this region's nucleotide sequence