Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09760 and BWI76_RS09765 are separated by 147 nucleotides BWI76_RS09765 and BWI76_RS09770 overlap by 54 nucleotides BWI76_RS09770 and BWI76_RS09775 overlap by 68 nucleotides BWI76_RS09775 and BWI76_RS09780 are separated by 137 nucleotides
BWI76_RS09760: BWI76_RS09760 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,047,316 to 2,048,599
_RS09760
BWI76_RS09765: BWI76_RS09765 - metalloprotease, at 2,048,747 to 2,049,514
_RS09765
BWI76_RS09770: BWI76_RS09770 - hypothetical protein, at 2,049,461 to 2,049,753
_RS09770
BWI76_RS09775: BWI76_RS09775 - cytidylate kinase, at 2,049,686 to 2,050,369
_RS09775
BWI76_RS09780: BWI76_RS09780 - 30S ribosomal protein S1, at 2,050,507 to 2,052,180
_RS09780
Position (kb) 2049
2050 Strain fitness (log2 ratio) -2
-1
0
1 at 2048.593 kb on + strand at 2048.593 kb on + strand at 2048.837 kb on - strand, within BWI76_RS09765 at 2049.152 kb on - strand, within BWI76_RS09765 at 2049.624 kb on - strand, within BWI76_RS09770
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 2,048,593 + +0.1 2,048,593 + -2.5 2,048,837 - BWI76_RS09765 0.12 +0.0 2,049,152 - BWI76_RS09765 0.53 +0.1 2,049,624 - BWI76_RS09770 0.56 -0.6
Or see this region's nucleotide sequence