Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08995 and BWI76_RS09000 are separated by 268 nucleotides BWI76_RS09000 and BWI76_RS09005 are separated by 182 nucleotides BWI76_RS09005 and BWI76_RS09010 overlap by 4 nucleotides
BWI76_RS08995: BWI76_RS08995 - sulfatase, at 1,895,065 to 1,896,642
_RS08995
BWI76_RS09000: BWI76_RS09000 - hypothetical protein, at 1,896,911 to 1,897,036
_RS09000
BWI76_RS09005: BWI76_RS09005 - transcriptional regulator MntR, at 1,897,219 to 1,897,692
_RS09005
BWI76_RS09010: BWI76_RS09010 - anion transporter, at 1,897,689 to 1,898,795
_RS09010
Position (kb) 1897
1898 Strain fitness (log2 ratio) -1
0
1
2
3 at 1896.395 kb on + strand, within BWI76_RS08995 at 1896.510 kb on - strand at 1896.515 kb on + strand at 1896.523 kb on - strand at 1896.523 kb on - strand at 1896.730 kb on + strand at 1897.074 kb on - strand at 1897.234 kb on + strand at 1897.858 kb on - strand, within BWI76_RS09010 at 1897.876 kb on + strand, within BWI76_RS09010 at 1898.002 kb on - strand, within BWI76_RS09010 at 1898.018 kb on - strand, within BWI76_RS09010 at 1898.140 kb on + strand, within BWI76_RS09010 at 1898.222 kb on - strand, within BWI76_RS09010 at 1898.227 kb on - strand, within BWI76_RS09010 at 1898.343 kb on - strand, within BWI76_RS09010
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 1,896,395 + BWI76_RS08995 0.84 +0.2 1,896,510 - +0.4 1,896,515 + +0.4 1,896,523 - -0.5 1,896,523 - -0.3 1,896,730 + -1.1 1,897,074 - +0.3 1,897,234 + +2.9 1,897,858 - BWI76_RS09010 0.15 +0.2 1,897,876 + BWI76_RS09010 0.17 +0.3 1,898,002 - BWI76_RS09010 0.28 +0.4 1,898,018 - BWI76_RS09010 0.30 -0.7 1,898,140 + BWI76_RS09010 0.41 +0.4 1,898,222 - BWI76_RS09010 0.48 +0.4 1,898,227 - BWI76_RS09010 0.49 +0.5 1,898,343 - BWI76_RS09010 0.59 +0.2
Or see this region's nucleotide sequence