Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08140 and BWI76_RS08145 are separated by 109 nucleotides BWI76_RS08145 and BWI76_RS08150 are separated by 97 nucleotides BWI76_RS08150 and BWI76_RS08155 are separated by 45 nucleotides BWI76_RS08155 and BWI76_RS08160 are separated by 21 nucleotides BWI76_RS08160 and BWI76_RS08165 are separated by 34 nucleotides BWI76_RS08165 and BWI76_RS08170 are separated by 35 nucleotides BWI76_RS08170 and BWI76_RS08175 are separated by 8 nucleotides BWI76_RS08175 and BWI76_RS08180 are separated by 229 nucleotides
BWI76_RS08140: BWI76_RS08140 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,725,763 to 1,726,938
_RS08140
BWI76_RS08145: BWI76_RS08145 - tRNA-Gln, at 1,727,048 to 1,727,122
_RS08145
BWI76_RS08150: BWI76_RS08150 - tRNA-Gln, at 1,727,220 to 1,727,294
_RS08150
BWI76_RS08155: BWI76_RS08155 - tRNA-Met, at 1,727,340 to 1,727,416
_RS08155
BWI76_RS08160: BWI76_RS08160 - tRNA-Gln, at 1,727,438 to 1,727,512
_RS08160
BWI76_RS08165: BWI76_RS08165 - tRNA-Gln, at 1,727,547 to 1,727,621
_RS08165
BWI76_RS08170: BWI76_RS08170 - tRNA-Leu, at 1,727,657 to 1,727,741
_RS08170
BWI76_RS08175: BWI76_RS08175 - tRNA-Met, at 1,727,750 to 1,727,826
_RS08175
BWI76_RS08180: BWI76_RS08180 - asparagine synthase B, at 1,728,056 to 1,729,717
_RS08180
Position (kb)
1727
1728 Strain fitness (log2 ratio)
-2
-1
0
1 at 1726.982 kb on - strand at 1728.054 kb on + strand at 1728.224 kb on + strand, within BWI76_RS08180 at 1728.453 kb on + strand, within BWI76_RS08180 at 1728.453 kb on + strand, within BWI76_RS08180 at 1728.461 kb on - strand, within BWI76_RS08180 at 1728.658 kb on - strand, within BWI76_RS08180
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 1,726,982 - -0.4 1,728,054 + -2.0 1,728,224 + BWI76_RS08180 0.10 -0.7 1,728,453 + BWI76_RS08180 0.24 -1.3 1,728,453 + BWI76_RS08180 0.24 +0.3 1,728,461 - BWI76_RS08180 0.24 +0.0 1,728,658 - BWI76_RS08180 0.36 +0.5
Or see this region's nucleotide sequence