Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07085

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07075 and BWI76_RS07080 are separated by 106 nucleotidesBWI76_RS07080 and BWI76_RS07085 are separated by 3 nucleotidesBWI76_RS07085 and BWI76_RS07090 are separated by 175 nucleotides BWI76_RS07075: BWI76_RS07075 - hypothetical protein, at 1,488,220 to 1,488,549 _RS07075 BWI76_RS07080: BWI76_RS07080 - UDP-2,3-diacylglucosamine diphosphatase, at 1,488,656 to 1,489,378 _RS07080 BWI76_RS07085: BWI76_RS07085 - peptidyl-prolyl cis-trans isomerase, at 1,489,382 to 1,489,876 _RS07085 BWI76_RS07090: BWI76_RS07090 - cysteine--tRNA ligase, at 1,490,052 to 1,491,437 _RS07090 Position (kb) 1489 1490Strain fitness (log2 ratio) -1 0 1at 1488.435 kb on + strand, within BWI76_RS07075at 1489.529 kb on - strand, within BWI76_RS07085at 1489.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
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1,488,435 + BWI76_RS07075 0.65 +0.3
1,489,529 - BWI76_RS07085 0.30 -1.1
1,489,987 - -0.7

Or see this region's nucleotide sequence