Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06545 and BWI76_RS06550 are separated by 148 nucleotides BWI76_RS06550 and BWI76_RS06555 are separated by 110 nucleotides BWI76_RS06555 and BWI76_RS06560 are separated by 201 nucleotides BWI76_RS06560 and BWI76_RS06565 are separated by 66 nucleotides
BWI76_RS06545: BWI76_RS06545 - peptidylprolyl isomerase, at 1,375,750 to 1,377,624
_RS06545
BWI76_RS06550: BWI76_RS06550 - competence protein ComEA, at 1,377,773 to 1,378,138
_RS06550
BWI76_RS06555: BWI76_RS06555 - thioesterase superfamily protein, at 1,378,249 to 1,378,650
_RS06555
BWI76_RS06560: BWI76_RS06560 - 7-cyano-7-deazaguanine synthase QueC, at 1,378,852 to 1,379,547
_RS06560
BWI76_RS06565: BWI76_RS06565 - putative periplasmic solute-binding protein, at 1,379,614 to 1,381,314
_RS06565
Position (kb) 1378
1379 Strain fitness (log2 ratio) -1
0
1 at 1377.660 kb on - strand at 1377.806 kb on + strand at 1377.819 kb on - strand, within BWI76_RS06550 at 1377.918 kb on + strand, within BWI76_RS06550 at 1378.025 kb on + strand, within BWI76_RS06550 at 1378.079 kb on - strand, within BWI76_RS06550 at 1378.745 kb on + strand at 1378.987 kb on + strand, within BWI76_RS06560 at 1378.992 kb on + strand, within BWI76_RS06560 at 1379.119 kb on + strand, within BWI76_RS06560 at 1379.156 kb on - strand, within BWI76_RS06560
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 1,377,660 - +0.1 1,377,806 + -0.6 1,377,819 - BWI76_RS06550 0.13 +0.0 1,377,918 + BWI76_RS06550 0.40 -0.8 1,378,025 + BWI76_RS06550 0.69 -0.4 1,378,079 - BWI76_RS06550 0.84 -0.2 1,378,745 + +1.1 1,378,987 + BWI76_RS06560 0.19 +1.1 1,378,992 + BWI76_RS06560 0.20 +0.1 1,379,119 + BWI76_RS06560 0.38 +1.0 1,379,156 - BWI76_RS06560 0.44 -0.1
Or see this region's nucleotide sequence