Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04510 and BWI76_RS04515 are separated by 4 nucleotides BWI76_RS04515 and BWI76_RS04520 are separated by 2 nucleotides BWI76_RS04520 and BWI76_RS04525 overlap by 4 nucleotides
BWI76_RS04510: BWI76_RS04510 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 933,391 to 934,239
_RS04510
BWI76_RS04515: BWI76_RS04515 - Co2+/Mg2+ efflux protein ApaG, at 934,244 to 934,621
_RS04515
BWI76_RS04520: BWI76_RS04520 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase, at 934,624 to 935,445
_RS04520
BWI76_RS04525: BWI76_RS04525 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 935,442 to 936,431
_RS04525
Position (kb) 934
935
936 Strain fitness (log2 ratio) -1
0
1 at 933.624 kb on + strand, within BWI76_RS04510 at 934.061 kb on - strand, within BWI76_RS04510 at 934.344 kb on - strand, within BWI76_RS04515 at 934.605 kb on - strand at 935.290 kb on + strand, within BWI76_RS04520 at 935.422 kb on + strand at 935.511 kb on + strand at 935.533 kb on - strand at 935.946 kb on - strand, within BWI76_RS04525 at 935.951 kb on - strand, within BWI76_RS04525 at 935.997 kb on - strand, within BWI76_RS04525
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 933,624 + BWI76_RS04510 0.27 -0.7 934,061 - BWI76_RS04510 0.79 +0.1 934,344 - BWI76_RS04515 0.26 -0.1 934,605 - -1.0 935,290 + BWI76_RS04520 0.81 -1.4 935,422 + +0.8 935,511 + +0.9 935,533 - -1.0 935,946 - BWI76_RS04525 0.51 +0.3 935,951 - BWI76_RS04525 0.51 +0.1 935,997 - BWI76_RS04525 0.56 +0.6
Or see this region's nucleotide sequence