Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04410 and BWI76_RS04415 are separated by 246 nucleotides BWI76_RS04415 and BWI76_RS04420 are separated by 12 nucleotides
BWI76_RS04410: BWI76_RS04410 - signal transduction histidine kinase regulating citrate/malate metabolism, at 909,333 to 910,961
_RS04410
BWI76_RS04415: BWI76_RS04415 - oxaloacetate decarboxylase subunit beta, at 911,208 to 912,509
_RS04415
BWI76_RS04420: BWI76_RS04420 - oxaloacetate decarboxylase, at 912,522 to 914,288
_RS04420
Position (kb) 911
912
913 Strain fitness (log2 ratio) -1
0
1 at 910.313 kb on + strand, within BWI76_RS04410 at 910.380 kb on + strand, within BWI76_RS04410 at 910.472 kb on + strand, within BWI76_RS04410 at 910.532 kb on + strand, within BWI76_RS04410 at 910.532 kb on + strand, within BWI76_RS04410 at 910.584 kb on - strand, within BWI76_RS04410 at 910.658 kb on - strand, within BWI76_RS04410 at 912.549 kb on + strand at 912.731 kb on + strand, within BWI76_RS04420 at 912.828 kb on + strand, within BWI76_RS04420 at 912.852 kb on + strand, within BWI76_RS04420 at 913.020 kb on + strand, within BWI76_RS04420 at 913.157 kb on + strand, within BWI76_RS04420
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 910,313 + BWI76_RS04410 0.60 +0.3 910,380 + BWI76_RS04410 0.64 +0.5 910,472 + BWI76_RS04410 0.70 -0.6 910,532 + BWI76_RS04410 0.74 +0.3 910,532 + BWI76_RS04410 0.74 -0.2 910,584 - BWI76_RS04410 0.77 +1.1 910,658 - BWI76_RS04410 0.81 -0.5 912,549 + -0.8 912,731 + BWI76_RS04420 0.12 -0.0 912,828 + BWI76_RS04420 0.17 +0.7 912,852 + BWI76_RS04420 0.19 +0.7 913,020 + BWI76_RS04420 0.28 -0.6 913,157 + BWI76_RS04420 0.36 +0.4
Or see this region's nucleotide sequence